miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6477 3' -60.5 NC_001847.1 + 133963 0.66 0.683744
Target:  5'- uGCCGGcCGCggCGGUGGcCUUCUgCGCGg -3'
miRNA:   3'- -CGGCC-GCGggGUUACCuGAAGG-GCGC- -5'
6477 3' -60.5 NC_001847.1 + 31666 0.66 0.713066
Target:  5'- cCCGcGCGCCCCGAggagcuaaGGGCgg-CCGUGu -3'
miRNA:   3'- cGGC-CGCGGGGUUa-------CCUGaagGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 52830 0.66 0.673879
Target:  5'- cGCCGGCGaCCCCGccc-GCauucUCCCGCc -3'
miRNA:   3'- -CGGCCGC-GGGGUuaccUGa---AGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 106794 0.66 0.673879
Target:  5'- cGCCGGgGgCCC---GGGCgcgcggcCCCGCGg -3'
miRNA:   3'- -CGGCCgCgGGGuuaCCUGaa-----GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 98599 0.66 0.703346
Target:  5'- cGCCGGCGCU----UGGGCggcgcggcacCCCGCa -3'
miRNA:   3'- -CGGCCGCGGgguuACCUGaa--------GGGCGc -5'
6477 3' -60.5 NC_001847.1 + 113529 0.66 0.683744
Target:  5'- cGCCGGCcaagcGCCgCCAGcgaguuuagggGGGCggggcCCCGCGg -3'
miRNA:   3'- -CGGCCG-----CGG-GGUUa----------CCUGaa---GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 112563 0.66 0.703346
Target:  5'- gGCgGGCccuGCCCCg--GGGCg-CCCGCu -3'
miRNA:   3'- -CGgCCG---CGGGGuuaCCUGaaGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 38524 0.66 0.673879
Target:  5'- cGCCGGC-CCCCGcgcacgcgcAaGGAaaaCCCGCGu -3'
miRNA:   3'- -CGGCCGcGGGGU---------UaCCUgaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 90541 0.66 0.673879
Target:  5'- -aCGGCGCCCUGGcGGcCcUCgCCGCGc -3'
miRNA:   3'- cgGCCGCGGGGUUaCCuGaAG-GGCGC- -5'
6477 3' -60.5 NC_001847.1 + 69232 0.66 0.683744
Target:  5'- cGCCGGCGCCgCGGcaacgcUGGccuACUaCgCGCGg -3'
miRNA:   3'- -CGGCCGCGGgGUU------ACC---UGAaGgGCGC- -5'
6477 3' -60.5 NC_001847.1 + 72204 0.66 0.683744
Target:  5'- uGCCGGaucuGCCCCccgacgaGGAgCcgCCCGCGg -3'
miRNA:   3'- -CGGCCg---CGGGGuua----CCU-GaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 12922 0.66 0.69357
Target:  5'- cGUgGGCGCCCCugaGGGCa-CCCGg- -3'
miRNA:   3'- -CGgCCGCGGGGuuaCCUGaaGGGCgc -5'
6477 3' -60.5 NC_001847.1 + 134250 0.66 0.722721
Target:  5'- gGCCGGCggccgcggcgGCCCCGGcgcGGGCcgccgCCgCGCGu -3'
miRNA:   3'- -CGGCCG----------CGGGGUUa--CCUGaa---GG-GCGC- -5'
6477 3' -60.5 NC_001847.1 + 58957 0.66 0.69357
Target:  5'- aGCCGGC-CCUCAGcUGG-CUcaccUCCUGCu -3'
miRNA:   3'- -CGGCCGcGGGGUU-ACCuGA----AGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 76768 0.66 0.69357
Target:  5'- cGCCGGCaCCCgcuaCGAggccGACgUCCCGCGc -3'
miRNA:   3'- -CGGCCGcGGG----GUUac--CUGaAGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 43552 0.66 0.703346
Target:  5'- -aCGGCGCCgCGGUuugcGcGCUUCgCCGCGg -3'
miRNA:   3'- cgGCCGCGGgGUUA----CcUGAAG-GGCGC- -5'
6477 3' -60.5 NC_001847.1 + 32903 0.66 0.713066
Target:  5'- cGCCGcGCGCgagcgCC--UGGACgccgUCCCGCc -3'
miRNA:   3'- -CGGC-CGCGg----GGuuACCUGa---AGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 60450 0.66 0.673879
Target:  5'- cGUCGGCgcuGCCCCcGUcGGGCgcgUCCGCc -3'
miRNA:   3'- -CGGCCG---CGGGGuUA-CCUGaa-GGGCGc -5'
6477 3' -60.5 NC_001847.1 + 43520 0.66 0.683744
Target:  5'- gGgCGGCGCgCgc--GGGCUUCCuCGCGg -3'
miRNA:   3'- -CgGCCGCGgGguuaCCUGAAGG-GCGC- -5'
6477 3' -60.5 NC_001847.1 + 11665 0.66 0.69357
Target:  5'- -gCGGCgGCCCCAGccGAg--CCCGCGg -3'
miRNA:   3'- cgGCCG-CGGGGUUacCUgaaGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.