miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6477 3' -60.5 NC_001847.1 + 49558 0.66 0.683744
Target:  5'- uGCCGGCGCgCCCGuc-GACggCgCCGUu -3'
miRNA:   3'- -CGGCCGCG-GGGUuacCUGaaG-GGCGc -5'
6477 3' -60.5 NC_001847.1 + 72204 0.66 0.683744
Target:  5'- uGCCGGaucuGCCCCccgacgaGGAgCcgCCCGCGg -3'
miRNA:   3'- -CGGCCg---CGGGGuua----CCU-GaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 58957 0.66 0.69357
Target:  5'- aGCCGGC-CCUCAGcUGG-CUcaccUCCUGCu -3'
miRNA:   3'- -CGGCCGcGGGGUU-ACCuGA----AGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 12922 0.66 0.69357
Target:  5'- cGUgGGCGCCCCugaGGGCa-CCCGg- -3'
miRNA:   3'- -CGgCCGCGGGGuuaCCUGaaGGGCgc -5'
6477 3' -60.5 NC_001847.1 + 103780 0.66 0.69357
Target:  5'- cGCCGGCaCCCgGccggcgGGGCUUCCgcCGCc -3'
miRNA:   3'- -CGGCCGcGGGgUua----CCUGAAGG--GCGc -5'
6477 3' -60.5 NC_001847.1 + 113529 0.66 0.683744
Target:  5'- cGCCGGCcaagcGCCgCCAGcgaguuuagggGGGCggggcCCCGCGg -3'
miRNA:   3'- -CGGCCG-----CGG-GGUUa----------CCUGaa---GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 70474 0.66 0.673879
Target:  5'- cGCgGGCG-CCCGGUGGAUggCgUGCu -3'
miRNA:   3'- -CGgCCGCgGGGUUACCUGaaGgGCGc -5'
6477 3' -60.5 NC_001847.1 + 69232 0.66 0.683744
Target:  5'- cGCCGGCGCCgCGGcaacgcUGGccuACUaCgCGCGg -3'
miRNA:   3'- -CGGCCGCGGgGUU------ACC---UGAaGgGCGC- -5'
6477 3' -60.5 NC_001847.1 + 11665 0.66 0.69357
Target:  5'- -gCGGCgGCCCCAGccGAg--CCCGCGg -3'
miRNA:   3'- cgGCCG-CGGGGUUacCUgaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 134012 0.66 0.69357
Target:  5'- cGCCgaGGCGCCgCCGcUGGuGCUggaggCCGCGg -3'
miRNA:   3'- -CGG--CCGCGG-GGUuACC-UGAag---GGCGC- -5'
6477 3' -60.5 NC_001847.1 + 90541 0.66 0.673879
Target:  5'- -aCGGCGCCCUGGcGGcCcUCgCCGCGc -3'
miRNA:   3'- cgGCCGCGGGGUUaCCuGaAG-GGCGC- -5'
6477 3' -60.5 NC_001847.1 + 52830 0.66 0.673879
Target:  5'- cGCCGGCGaCCCCGccc-GCauucUCCCGCc -3'
miRNA:   3'- -CGGCCGC-GGGGUuaccUGa---AGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 67527 0.66 0.683744
Target:  5'- cGCCGGCGCCgCCu-----UUUUCCGCa -3'
miRNA:   3'- -CGGCCGCGG-GGuuaccuGAAGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 92639 0.66 0.683744
Target:  5'- -aCGGCGCgCCCGGcGGuuucgCCCGCa -3'
miRNA:   3'- cgGCCGCG-GGGUUaCCugaa-GGGCGc -5'
6477 3' -60.5 NC_001847.1 + 131821 0.66 0.69357
Target:  5'- gGCCGGCGCCggcggCAGcGGcg--CCCGCGc -3'
miRNA:   3'- -CGGCCGCGGg----GUUaCCugaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 133963 0.66 0.683744
Target:  5'- uGCCGGcCGCggCGGUGGcCUUCUgCGCGg -3'
miRNA:   3'- -CGGCC-GCGggGUUACCuGAAGG-GCGC- -5'
6477 3' -60.5 NC_001847.1 + 43520 0.66 0.683744
Target:  5'- gGgCGGCGCgCgc--GGGCUUCCuCGCGg -3'
miRNA:   3'- -CgGCCGCGgGguuaCCUGAAGG-GCGC- -5'
6477 3' -60.5 NC_001847.1 + 38524 0.66 0.673879
Target:  5'- cGCCGGC-CCCCGcgcacgcgcAaGGAaaaCCCGCGu -3'
miRNA:   3'- -CGGCCGcGGGGU---------UaCCUgaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 60450 0.66 0.673879
Target:  5'- cGUCGGCgcuGCCCCcGUcGGGCgcgUCCGCc -3'
miRNA:   3'- -CGGCCG---CGGGGuUA-CCUGaa-GGGCGc -5'
6477 3' -60.5 NC_001847.1 + 106794 0.66 0.673879
Target:  5'- cGCCGGgGgCCC---GGGCgcgcggcCCCGCGg -3'
miRNA:   3'- -CGGCCgCgGGGuuaCCUGaa-----GGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.