miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6477 3' -60.5 NC_001847.1 + 112 0.73 0.309046
Target:  5'- uCCGGCGCCCCGcgccccGGCcccgCCCGCGg -3'
miRNA:   3'- cGGCCGCGGGGUuac---CUGaa--GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 214 0.67 0.644121
Target:  5'- cCCGGCGCCCgg--GGGCccgagCCCGgGc -3'
miRNA:   3'- cGGCCGCGGGguuaCCUGaa---GGGCgC- -5'
6477 3' -60.5 NC_001847.1 + 256 0.7 0.452024
Target:  5'- cCCGGCGCCCag--GGGCccgagCCCGgGg -3'
miRNA:   3'- cGGCCGCGGGguuaCCUGaa---GGGCgC- -5'
6477 3' -60.5 NC_001847.1 + 303 0.71 0.392118
Target:  5'- cGCCGuccccGCGCCCCGccGGAgCUUCgCGCu -3'
miRNA:   3'- -CGGC-----CGCGGGGUuaCCU-GAAGgGCGc -5'
6477 3' -60.5 NC_001847.1 + 339 0.69 0.516594
Target:  5'- cGCCcGCGUCCCucccGGGCUUCgCGCc -3'
miRNA:   3'- -CGGcCGCGGGGuua-CCUGAAGgGCGc -5'
6477 3' -60.5 NC_001847.1 + 474 0.68 0.604351
Target:  5'- uUCGGCGCCgUcAUGGGug-CCCGCGc -3'
miRNA:   3'- cGGCCGCGGgGuUACCUgaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 719 0.72 0.3728
Target:  5'- cGCCGucGCGCCCCcucccuccCUUCCCGCGg -3'
miRNA:   3'- -CGGC--CGCGGGGuuaccu--GAAGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 925 0.68 0.584554
Target:  5'- cGCCGGCGCCg----GGAagcccgagCCCGCGc -3'
miRNA:   3'- -CGGCCGCGGgguuaCCUgaa-----GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 967 0.71 0.417162
Target:  5'- cGCCGGCaCCCgGGccggcgGGGCUUCcgCCGCGg -3'
miRNA:   3'- -CGGCCGcGGGgUUa-----CCUGAAG--GGCGC- -5'
6477 3' -60.5 NC_001847.1 + 1937 0.71 0.420574
Target:  5'- aGCCGGCGCgcggcgcagagcuccUCCAGcgaGGGCagCCCGCGc -3'
miRNA:   3'- -CGGCCGCG---------------GGGUUa--CCUGaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 1951 0.66 0.722721
Target:  5'- cGCCGGCGCucgucCUCGccGGGCggCgCCGCc -3'
miRNA:   3'- -CGGCCGCG-----GGGUuaCCUGaaG-GGCGc -5'
6477 3' -60.5 NC_001847.1 + 2067 0.7 0.455597
Target:  5'- cGCCGcagcgguggcggcgaGCGCCCCGcgGGg---CCCGCGc -3'
miRNA:   3'- -CGGC---------------CGCGGGGUuaCCugaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 2391 0.72 0.38077
Target:  5'- cGCCGGCGCCUCGgcccagaGUcguccucccccgagGGGCccCCCGCGg -3'
miRNA:   3'- -CGGCCGCGGGGU-------UA--------------CCUGaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 2773 0.71 0.400356
Target:  5'- cGCCGGCGCCCCcgccgGcGGCcUCcagggCCGCGa -3'
miRNA:   3'- -CGGCCGCGGGGuua--C-CUGaAG-----GGCGC- -5'
6477 3' -60.5 NC_001847.1 + 3333 0.67 0.661007
Target:  5'- cGCCGGCGCCggccuccggguaggCCAuggGGGCguaCgCGCGc -3'
miRNA:   3'- -CGGCCGCGG--------------GGUua-CCUGaa-GgGCGC- -5'
6477 3' -60.5 NC_001847.1 + 3938 0.68 0.574702
Target:  5'- cGCUGGCGCCgCGGcgggggGGGCgccgucUCCgGCGg -3'
miRNA:   3'- -CGGCCGCGGgGUUa-----CCUGa-----AGGgCGC- -5'
6477 3' -60.5 NC_001847.1 + 3989 0.68 0.555118
Target:  5'- gGCCGGgcgcgcgGCCCCGcgGGGCgccgggCCCgGCGc -3'
miRNA:   3'- -CGGCCg------CGGGGUuaCCUGaa----GGG-CGC- -5'
6477 3' -60.5 NC_001847.1 + 4186 0.68 0.584554
Target:  5'- gGCCGcGCGCCC--GUGGGCcgCgCGCa -3'
miRNA:   3'- -CGGC-CGCGGGguUACCUGaaGgGCGc -5'
6477 3' -60.5 NC_001847.1 + 4220 0.69 0.545399
Target:  5'- cGCCGGCcucgguccugGCCCCGA-GGGCa--CCGCc -3'
miRNA:   3'- -CGGCCG----------CGGGGUUaCCUGaagGGCGc -5'
6477 3' -60.5 NC_001847.1 + 4296 0.69 0.545399
Target:  5'- cGCCGGCGCCU---UGGuACUcgcgcgccgCCUGCGg -3'
miRNA:   3'- -CGGCCGCGGGguuACC-UGAa--------GGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.