miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6477 3' -60.5 NC_001847.1 + 103532 0.72 0.3728
Target:  5'- cGCCGucGCGCCCCcucccuccCUUCCCGCGg -3'
miRNA:   3'- -CGGC--CGCGGGGuuaccu--GAAGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 107343 0.73 0.309046
Target:  5'- cUCGGCGCCCuCGGUGGcc--CCCGCGu -3'
miRNA:   3'- cGGCCGCGGG-GUUACCugaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 127057 0.73 0.309046
Target:  5'- gGUCGGCGCCUCGccgugGUGGACaggccccCCCGCu -3'
miRNA:   3'- -CGGCCGCGGGGU-----UACCUGaa-----GGGCGc -5'
6477 3' -60.5 NC_001847.1 + 15070 0.73 0.309046
Target:  5'- aCCGGCGgCCCGG-GGAUcgCCUGCGg -3'
miRNA:   3'- cGGCCGCgGGGUUaCCUGaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 73889 0.73 0.322384
Target:  5'- cGCCGGCGCCCCGcgcagcgAUGGcCcagCCCGa- -3'
miRNA:   3'- -CGGCCGCGGGGU-------UACCuGaa-GGGCgc -5'
6477 3' -60.5 NC_001847.1 + 81335 0.73 0.330301
Target:  5'- uCCGGCGCgCCAggGGGCgcagaccUCCuCGCGg -3'
miRNA:   3'- cGGCCGCGgGGUuaCCUGa------AGG-GCGC- -5'
6477 3' -60.5 NC_001847.1 + 43374 0.73 0.337622
Target:  5'- gGCCaGCGCCgCCGAcGGAgcgCCCGCGg -3'
miRNA:   3'- -CGGcCGCGG-GGUUaCCUgaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 42370 0.72 0.360286
Target:  5'- gGCCaGCGCCUCGGgggGGAUgagCUCGCGg -3'
miRNA:   3'- -CGGcCGCGGGGUUa--CCUGaa-GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 104764 0.72 0.368072
Target:  5'- cGCCGGCGCucgucCUCGccGGGCggCCCGCc -3'
miRNA:   3'- -CGGCCGCG-----GGGUuaCCUGaaGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 102925 0.73 0.309046
Target:  5'- uCCGGCGCCCCGcgccccGGCcccgCCCGCGg -3'
miRNA:   3'- cGGCCGCGGGGUuac---CUGaa--GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 134194 0.73 0.301518
Target:  5'- uGCCGGCGCagucgucCCCGGgcgcgggcucGGGCUUCCCgGCGc -3'
miRNA:   3'- -CGGCCGCG-------GGGUUa---------CCUGAAGGG-CGC- -5'
6477 3' -60.5 NC_001847.1 + 44372 0.74 0.295464
Target:  5'- cGCCGuuuGCGCCUCAA-GGGCgcUCCCGCu -3'
miRNA:   3'- -CGGC---CGCGGGGUUaCCUGa-AGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 82227 0.79 0.144084
Target:  5'- cGCgGGCGCCCCGAgccGCUgCCCGCGg -3'
miRNA:   3'- -CGgCCGCGGGGUUaccUGAaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 56367 0.78 0.151453
Target:  5'- gGCCGGCGCCUCAA-GGAgccggUCUCGCGg -3'
miRNA:   3'- -CGGCCGCGGGGUUaCCUga---AGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 102784 0.77 0.184457
Target:  5'- cGCCGGCGCCCCccgcgcggGGGCUgggcccccUCCGCGc -3'
miRNA:   3'- -CGGCCGCGGGGuua-----CCUGAa-------GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 30711 0.76 0.198391
Target:  5'- cCCGGCGCUCC--UGGACg-CCCGCGc -3'
miRNA:   3'- cGGCCGCGGGGuuACCUGaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 125392 0.75 0.234499
Target:  5'- aGCgGGCGCCCCg--GGGCagggCCCGCc -3'
miRNA:   3'- -CGgCCGCGGGGuuaCCUGaa--GGGCGc -5'
6477 3' -60.5 NC_001847.1 + 134395 0.74 0.269704
Target:  5'- gGCCGGCcucGCCCUAggGGGg--CCCGCGg -3'
miRNA:   3'- -CGGCCG---CGGGGUuaCCUgaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 93145 0.74 0.269704
Target:  5'- uGCCGGCGCCCCccGcgGGAaaggcggCCGCGa -3'
miRNA:   3'- -CGGCCGCGGGG--UuaCCUgaag---GGCGC- -5'
6477 3' -60.5 NC_001847.1 + 133210 0.74 0.282352
Target:  5'- cGCCGGCgGCCCgAGUGGcCgccgCgCCGCGg -3'
miRNA:   3'- -CGGCCG-CGGGgUUACCuGaa--G-GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.