miRNA display CGI


Results 1 - 20 of 314 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6477 3' -60.5 NC_001847.1 + 36562 1.1 0.000937
Target:  5'- cGCCGGCGCCCCAAUGGACUUCCCGCGu -3'
miRNA:   3'- -CGGCCGCGGGGUUACCUGAAGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 28335 0.79 0.140523
Target:  5'- cCCGGCGCCCCGcgGGGCcgcgcgCCCGgGc -3'
miRNA:   3'- cGGCCGCGGGGUuaCCUGaa----GGGCgC- -5'
6477 3' -60.5 NC_001847.1 + 131148 0.79 0.140523
Target:  5'- cCCGGCGCCCCGcgGGGCcgcgcgCCCGgGc -3'
miRNA:   3'- cGGCCGCGGGGUuaCCUGaa----GGGCgC- -5'
6477 3' -60.5 NC_001847.1 + 82227 0.79 0.144084
Target:  5'- cGCgGGCGCCCCGAgccGCUgCCCGCGg -3'
miRNA:   3'- -CGgCCGCGGGGUUaccUGAaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 56367 0.78 0.151453
Target:  5'- gGCCGGCGCCUCAA-GGAgccggUCUCGCGg -3'
miRNA:   3'- -CGGCCGCGGGGUUaCCUga---AGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 102784 0.77 0.184457
Target:  5'- cGCCGGCGCCCCccgcgcggGGGCUgggcccccUCCGCGc -3'
miRNA:   3'- -CGGCCGCGGGGuua-----CCUGAa-------GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 30711 0.76 0.198391
Target:  5'- cCCGGCGCUCC--UGGACg-CCCGCGc -3'
miRNA:   3'- cGGCCGCGGGGuuACCUGaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 12306 0.76 0.208183
Target:  5'- aGCCagGGCGCgggCCCGGUGGGCgcgCCCGCc -3'
miRNA:   3'- -CGG--CCGCG---GGGUUACCUGaa-GGGCGc -5'
6477 3' -60.5 NC_001847.1 + 83171 0.76 0.208183
Target:  5'- cGCCGGCGCaCCCAGUGcaucACUg-CCGCGg -3'
miRNA:   3'- -CGGCCGCG-GGGUUACc---UGAagGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 130809 0.76 0.21839
Target:  5'- aGCUGGCGCCCUAcAUGGcggagcACUaCCCGCa -3'
miRNA:   3'- -CGGCCGCGGGGU-UACC------UGAaGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 89867 0.76 0.223652
Target:  5'- gGCCGGCucGCCgCGGcGGGCUUCgCCGCGc -3'
miRNA:   3'- -CGGCCG--CGGgGUUaCCUGAAG-GGCGC- -5'
6477 3' -60.5 NC_001847.1 + 22579 0.75 0.234499
Target:  5'- aGCgGGCGCCCCg--GGGCagggCCCGCc -3'
miRNA:   3'- -CGgCCGCGGGGuuaCCUGaa--GGGCGc -5'
6477 3' -60.5 NC_001847.1 + 125392 0.75 0.234499
Target:  5'- aGCgGGCGCCCCg--GGGCagggCCCGCc -3'
miRNA:   3'- -CGgCCGCGGGGuuaCCUGaa--GGGCGc -5'
6477 3' -60.5 NC_001847.1 + 103089 0.74 0.269704
Target:  5'- cGCCGucuccGCGCCCCGGaccuuucgcggGGGCUUCcCCGCGc -3'
miRNA:   3'- -CGGC-----CGCGGGGUUa----------CCUGAAG-GGCGC- -5'
6477 3' -60.5 NC_001847.1 + 93145 0.74 0.269704
Target:  5'- uGCCGGCGCCCCccGcgGGAaaggcggCCGCGa -3'
miRNA:   3'- -CGGCCGCGGGG--UuaCCUgaag---GGCGC- -5'
6477 3' -60.5 NC_001847.1 + 134395 0.74 0.269704
Target:  5'- gGCCGGCcucGCCCUAggGGGg--CCCGCGg -3'
miRNA:   3'- -CGGCCG---CGGGGUuaCCUgaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 31582 0.74 0.269704
Target:  5'- gGCCGGCcucGCCCUAggGGGg--CCCGCGg -3'
miRNA:   3'- -CGGCCG---CGGGGUuaCCUgaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 30397 0.74 0.282352
Target:  5'- cGCCGGCgGCCCgAGUGGcCgccgCgCCGCGg -3'
miRNA:   3'- -CGGCCG-CGGGgUUACCuGaa--G-GGCGC- -5'
6477 3' -60.5 NC_001847.1 + 133210 0.74 0.282352
Target:  5'- cGCCGGCgGCCCgAGUGGcCgccgCgCCGCGg -3'
miRNA:   3'- -CGGCCG-CGGGgUUACCuGaa--G-GGCGC- -5'
6477 3' -60.5 NC_001847.1 + 42101 0.74 0.295464
Target:  5'- uGCCGGCaccguccagGCgCCGggGGccGCUUCCCGCGu -3'
miRNA:   3'- -CGGCCG---------CGgGGUuaCC--UGAAGGGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.