miRNA display CGI


Results 21 - 40 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6478 3' -55.9 NC_001847.1 + 10508 0.66 0.880204
Target:  5'- -----gGC-CCCGCGCUG-CUGCGGg -3'
miRNA:   3'- uuuauaUGaGGGCGCGGCcGACGCUg -5'
6478 3' -55.9 NC_001847.1 + 10705 0.69 0.698902
Target:  5'- -----gGCgcggCCCGCGCCGGCcaaGCGcCg -3'
miRNA:   3'- uuuauaUGa---GGGCGCGGCCGa--CGCuG- -5'
6478 3' -55.9 NC_001847.1 + 10920 0.66 0.856671
Target:  5'- ---gGUACUaCCGCgaggcgaGCCGGCUggcGCGGCu -3'
miRNA:   3'- uuuaUAUGAgGGCG-------CGGCCGA---CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 11305 0.71 0.563436
Target:  5'- aAGAUGgGCgcgCCCGCcgagGCCGGCggGCGGCu -3'
miRNA:   3'- -UUUAUaUGa--GGGCG----CGGCCGa-CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 11593 0.69 0.729482
Target:  5'- ----uUGCUUCUGCGCUGGCcgGCG-Cg -3'
miRNA:   3'- uuuauAUGAGGGCGCGGCCGa-CGCuG- -5'
6478 3' -55.9 NC_001847.1 + 11896 0.71 0.615457
Target:  5'- ---gGUGCggccggggUCCGCGCUGGC-GCGGCa -3'
miRNA:   3'- uuuaUAUGa-------GGGCGCGGCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 12429 0.7 0.667794
Target:  5'- uGAGUGcggGCUCCaagGCGCCGGCacagcgcgcGCGGCg -3'
miRNA:   3'- -UUUAUa--UGAGGg--CGCGGCCGa--------CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 12479 0.67 0.78799
Target:  5'- -----gGCuUCCCGCGUggCGGCggggGCGGCc -3'
miRNA:   3'- uuuauaUG-AGGGCGCG--GCCGa---CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 13433 0.66 0.880204
Target:  5'- -----aGCggggCCUGCGCUGGCUGUa-- -3'
miRNA:   3'- uuuauaUGa---GGGCGCGGCCGACGcug -5'
6478 3' -55.9 NC_001847.1 + 14135 0.68 0.739511
Target:  5'- cGAUGgGCggggCCCGCGCCugGGCggccgcuaggGCGACg -3'
miRNA:   3'- uUUAUaUGa---GGGCGCGG--CCGa---------CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 14317 0.66 0.856671
Target:  5'- -----cGCUCCCGCugcucgcggugggGCCGGgCguggugGCGGCg -3'
miRNA:   3'- uuuauaUGAGGGCG-------------CGGCC-Ga-----CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 14644 0.72 0.553154
Target:  5'- -----cGCUCgCGCGCCGcucGCUGCGAg -3'
miRNA:   3'- uuuauaUGAGgGCGCGGC---CGACGCUg -5'
6478 3' -55.9 NC_001847.1 + 15225 0.69 0.719364
Target:  5'- -cGUAUAgaCgaaguaCGCGCCGGCgGCGGCg -3'
miRNA:   3'- uuUAUAUgaGg-----GCGCGGCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 15497 0.68 0.749443
Target:  5'- ------cCUCCCGC-CCGGCUGCc-- -3'
miRNA:   3'- uuuauauGAGGGCGcGGCCGACGcug -5'
6478 3' -55.9 NC_001847.1 + 15932 0.68 0.77855
Target:  5'- -----cGC-CCCGCGgUGGCcGCGGCg -3'
miRNA:   3'- uuuauaUGaGGGCGCgGCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 15991 0.71 0.604995
Target:  5'- -----cGC-CCCGCGgCGGCcGCGGCg -3'
miRNA:   3'- uuuauaUGaGGGCGCgGCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 16051 0.71 0.604995
Target:  5'- -----cGC-CCCGCGgCGGCcGCGGCg -3'
miRNA:   3'- uuuauaUGaGGGCGCgGCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 16445 0.67 0.815391
Target:  5'- gGGAUAUAUaCCCa-GCCggGGCUGCGGCc -3'
miRNA:   3'- -UUUAUAUGaGGGcgCGG--CCGACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 18915 0.67 0.815391
Target:  5'- ---cGUGCUCCUGCGC-GGgaGCaGGCc -3'
miRNA:   3'- uuuaUAUGAGGGCGCGgCCgaCG-CUG- -5'
6478 3' -55.9 NC_001847.1 + 19390 0.7 0.646887
Target:  5'- -----gGCUCCC-CGCuCGGCUccGCGGCg -3'
miRNA:   3'- uuuauaUGAGGGcGCG-GCCGA--CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.