miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6478 3' -55.9 NC_001847.1 + 884 0.66 0.865266
Target:  5'- -----gGCggCCCGCGCCGGggccgccGCGGCc -3'
miRNA:   3'- uuuauaUGa-GGGCGCGGCCga-----CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 988 0.66 0.849446
Target:  5'- -----gGCUUCCGC-CgCGGCgGCGGCa -3'
miRNA:   3'- uuuauaUGAGGGCGcG-GCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 2176 0.66 0.849446
Target:  5'- -----aGCgCCCGCGCCGcCUggGCGGCg -3'
miRNA:   3'- uuuauaUGaGGGCGCGGCcGA--CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 2346 0.71 0.59247
Target:  5'- -----gGCUCCCgccGCGCCGGCccggccgcgucgGCGGCg -3'
miRNA:   3'- uuuauaUGAGGG---CGCGGCCGa-----------CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 2377 0.66 0.865266
Target:  5'- -----cGCgcgCCCGCGaagaCGGCgGUGACg -3'
miRNA:   3'- uuuauaUGa--GGGCGCg---GCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 2459 0.7 0.646887
Target:  5'- -----aGCUCCCGaucgaGCgGGCgGCGGCg -3'
miRNA:   3'- uuuauaUGAGGGCg----CGgCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 2546 0.71 0.584143
Target:  5'- -----cGCUCCCGcCGCCGGgCcgggGCGGCc -3'
miRNA:   3'- uuuauaUGAGGGC-GCGGCC-Ga---CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 2765 0.66 0.849446
Target:  5'- -----gGCgCCgGCGCCGGCgcccccgccgGCGGCc -3'
miRNA:   3'- uuuauaUGaGGgCGCGGCCGa---------CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 3223 0.66 0.857463
Target:  5'- ---cGUGCcUCCGCGCCG-CcGCGGCu -3'
miRNA:   3'- uuuaUAUGaGGGCGCGGCcGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 3233 0.7 0.646887
Target:  5'- -----cGCgccgCCCGCGCCGuGCUcgccgGCGGCa -3'
miRNA:   3'- uuuauaUGa---GGGCGCGGC-CGA-----CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 3927 0.76 0.318919
Target:  5'- ----uUGCgcgCCCGCGCUGGCgccGCGGCg -3'
miRNA:   3'- uuuauAUGa--GGGCGCGGCCGa--CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 4308 0.73 0.463861
Target:  5'- ---gGUACUCgCGCGCCGcCUGCGGg -3'
miRNA:   3'- uuuaUAUGAGgGCGCGGCcGACGCUg -5'
6478 3' -55.9 NC_001847.1 + 4894 0.71 0.573768
Target:  5'- -----gGCcCCCGCGCCG-CUGCGAa -3'
miRNA:   3'- uuuauaUGaGGGCGCGGCcGACGCUg -5'
6478 3' -55.9 NC_001847.1 + 5666 0.66 0.872848
Target:  5'- ---gAUGCgcgCCguCGCGCgCGGCgGCGGCc -3'
miRNA:   3'- uuuaUAUGa--GG--GCGCG-GCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 6353 0.67 0.78799
Target:  5'- -----gGCaaCCGCGCCGcgggcguagccGCUGCGGCa -3'
miRNA:   3'- uuuauaUGagGGCGCGGC-----------CGACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 8232 0.72 0.553154
Target:  5'- ----cUGCgCCaCGCGCUGGCcUGCGGCa -3'
miRNA:   3'- uuuauAUGaGG-GCGCGGCCG-ACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 8302 0.66 0.865266
Target:  5'- -----gGCUCCCcgggGgGCCaGGCUGuCGGCa -3'
miRNA:   3'- uuuauaUGAGGG----CgCGG-CCGAC-GCUG- -5'
6478 3' -55.9 NC_001847.1 + 9071 0.66 0.849446
Target:  5'- -----cGCUCCauuGCaGCCGGCU-CGACg -3'
miRNA:   3'- uuuauaUGAGGg--CG-CGGCCGAcGCUG- -5'
6478 3' -55.9 NC_001847.1 + 9445 0.67 0.824188
Target:  5'- ---cAUGCUCuuGCagaaccCCGGCgGCGACc -3'
miRNA:   3'- uuuaUAUGAGggCGc-----GGCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 9494 0.66 0.849446
Target:  5'- ---------aCCGCGCCGGUggaccaggGCGACa -3'
miRNA:   3'- uuuauaugagGGCGCGGCCGa-------CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.