miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6478 3' -55.9 NC_001847.1 + 53173 0.66 0.841223
Target:  5'- ----cUGCUCgggcgCUGCGacCCGGCUGUGGCg -3'
miRNA:   3'- uuuauAUGAG-----GGCGC--GGCCGACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 51021 0.66 0.857463
Target:  5'- -----aGCUUUCGCGgcgcuCUGGCUGCGAUc -3'
miRNA:   3'- uuuauaUGAGGGCGC-----GGCCGACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 132795 0.66 0.857463
Target:  5'- -----cGCggCCGgGCCGGC-GCGGCg -3'
miRNA:   3'- uuuauaUGagGGCgCGGCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 19657 0.66 0.841223
Target:  5'- ----uUGCgggCCCGgcCGCCGGaaaCUGCGACc -3'
miRNA:   3'- uuuauAUGa--GGGC--GCGGCC---GACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 88490 0.66 0.841223
Target:  5'- ----cUACUCUgccgaauggaCGaCGgCGGCUGCGACg -3'
miRNA:   3'- uuuauAUGAGG----------GC-GCgGCCGACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 99527 0.66 0.841223
Target:  5'- -----aGC-CCCGCGCCGcGCgcuuucguuUGCGAUg -3'
miRNA:   3'- uuuauaUGaGGGCGCGGC-CG---------ACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 88912 0.66 0.849446
Target:  5'- -----gGCUCCCuugcgcGCGCgCGGCUcugcgccaugcGCGACg -3'
miRNA:   3'- uuuauaUGAGGG------CGCG-GCCGA-----------CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 10920 0.66 0.856671
Target:  5'- ---gGUACUaCCGCgaggcgaGCCGGCUggcGCGGCu -3'
miRNA:   3'- uuuaUAUGAgGGCG-------CGGCCGA---CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 111884 0.66 0.849446
Target:  5'- -----cGCUCCauuGCaGCCGGCU-CGACg -3'
miRNA:   3'- uuuauaUGAGGg--CG-CGGCCGAcGCUG- -5'
6478 3' -55.9 NC_001847.1 + 3223 0.66 0.857463
Target:  5'- ---cGUGCcUCCGCGCCG-CcGCGGCu -3'
miRNA:   3'- uuuaUAUGaGGGCGCGGCcGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 33215 0.66 0.841223
Target:  5'- cGGGUGgcucgGCUUggcgCCGCGCCGGgCgccGCGGCg -3'
miRNA:   3'- -UUUAUa----UGAG----GGCGCGGCC-Ga--CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 66056 0.66 0.849446
Target:  5'- -cGUcgGCggCgGCGCCGGggGCGACg -3'
miRNA:   3'- uuUAuaUGagGgCGCGGCCgaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 72031 0.66 0.857463
Target:  5'- --------aCCCGUGCgCGGCgGCGGCc -3'
miRNA:   3'- uuuauaugaGGGCGCG-GCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 112307 0.66 0.849446
Target:  5'- ---------aCCGCGCCGGUggaccaggGCGACa -3'
miRNA:   3'- uuuauaugagGGCGCGGCCGa-------CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 34588 0.66 0.849446
Target:  5'- ----cUGCgcaaggCCCggGCGCUGGCgcgGCGGCg -3'
miRNA:   3'- uuuauAUGa-----GGG--CGCGGCCGa--CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 62075 0.66 0.849446
Target:  5'- -cGUcgACUUCCGCGCCcGCgGCG-Cg -3'
miRNA:   3'- uuUAuaUGAGGGCGCGGcCGaCGCuG- -5'
6478 3' -55.9 NC_001847.1 + 2176 0.66 0.849446
Target:  5'- -----aGCgCCCGCGCCGcCUggGCGGCg -3'
miRNA:   3'- uuuauaUGaGGGCGCGGCcGA--CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 43429 0.66 0.857463
Target:  5'- ----cUGCUgCUGCugGCCGGCgucGCGACc -3'
miRNA:   3'- uuuauAUGAgGGCG--CGGCCGa--CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 105578 0.66 0.849446
Target:  5'- -----gGCgCCgGCGCCGGCgcccccgccgGCGGCc -3'
miRNA:   3'- uuuauaUGaGGgCGCGGCCGa---------CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 42954 0.66 0.841223
Target:  5'- -cGUGUGCUUCCGCa-CGGacgGCGGCg -3'
miRNA:   3'- uuUAUAUGAGGGCGcgGCCga-CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.