miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6478 3' -55.9 NC_001847.1 + 35888 1.08 0.002549
Target:  5'- cAAAUAUACUCCCGCGCCGGCUGCGACa -3'
miRNA:   3'- -UUUAUAUGAGGGCGCGGCCGACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 71739 0.82 0.146842
Target:  5'- -cGUGcGCUCCCGUGCgaGGCUGCGGCg -3'
miRNA:   3'- uuUAUaUGAGGGCGCGg-CCGACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 115809 0.79 0.210725
Target:  5'- -----gGCUCCgCGCGCUGcGCUGCGGCg -3'
miRNA:   3'- uuuauaUGAGG-GCGCGGC-CGACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 125061 0.79 0.216104
Target:  5'- --uUGUGCUCCCGCGCgCGGCgggGCG-Cu -3'
miRNA:   3'- uuuAUAUGAGGGCGCG-GCCGa--CGCuG- -5'
6478 3' -55.9 NC_001847.1 + 103800 0.77 0.269946
Target:  5'- -----gGCUUCCGcCGCCGGCgGCGGCa -3'
miRNA:   3'- uuuauaUGAGGGC-GCGGCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 106740 0.76 0.318919
Target:  5'- ----uUGCgcgCCCGCGCUGGCgccGCGGCg -3'
miRNA:   3'- uuuauAUGa--GGGCGCGGCCGa--CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 3927 0.76 0.318919
Target:  5'- ----uUGCgcgCCCGCGCUGGCgccGCGGCg -3'
miRNA:   3'- uuuauAUGa--GGGCGCGGCCGa--CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 134226 0.75 0.374268
Target:  5'- -----gGCuUCCCgGCGCCGGCggGCGGCg -3'
miRNA:   3'- uuuauaUG-AGGG-CGCGGCCGa-CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 31413 0.75 0.374268
Target:  5'- -----gGCuUCCCgGCGCCGGCggGCGGCg -3'
miRNA:   3'- uuuauaUG-AGGG-CGCGGCCGa-CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 122642 0.75 0.374268
Target:  5'- -----gACga-CGCGCCGGCUGCGGCc -3'
miRNA:   3'- uuuauaUGaggGCGCGGCCGACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 71591 0.75 0.391234
Target:  5'- ---aGUGCcgCCCgGCGCCGGCccagGCGGCg -3'
miRNA:   3'- uuuaUAUGa-GGG-CGCGGCCGa---CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 36988 0.74 0.408693
Target:  5'- -----aGCgggCCCGCGCCGaGCgGCGGCg -3'
miRNA:   3'- uuuauaUGa--GGGCGCGGC-CGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 131244 0.73 0.463861
Target:  5'- -----gGCgCCCGCGCUGGCUacgccGCGGCg -3'
miRNA:   3'- uuuauaUGaGGGCGCGGCCGA-----CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 4308 0.73 0.463861
Target:  5'- ---gGUACUCgCGCGCCGcCUGCGGg -3'
miRNA:   3'- uuuaUAUGAGgGCGCGGCcGACGCUg -5'
6478 3' -55.9 NC_001847.1 + 28431 0.73 0.463861
Target:  5'- -----gGCgCCCGCGCUGGCUacgccGCGGCg -3'
miRNA:   3'- uuuauaUGaGGGCGCGGCCGA-----CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 84664 0.73 0.463861
Target:  5'- ---gAUACggccggaCCgGCGCCGGuCUGCGGCa -3'
miRNA:   3'- uuuaUAUGa------GGgCGCGGCC-GACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 36614 0.73 0.47055
Target:  5'- cGGGUGUGCUaCCGCGCggugggcgacaagcUGGCUGUGGCg -3'
miRNA:   3'- -UUUAUAUGAgGGCGCG--------------GCCGACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 80687 0.73 0.492865
Target:  5'- ----cUGCgcgCCgGCGgCGGCUGCGGCu -3'
miRNA:   3'- uuuauAUGa--GGgCGCgGCCGACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 88092 0.73 0.492865
Target:  5'- ---------aCCGCGCCGGCcGCGACa -3'
miRNA:   3'- uuuauaugagGGCGCGGCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 77093 0.73 0.492865
Target:  5'- cAAUcgGCggCCCGCGCgCGGUaGCGGCg -3'
miRNA:   3'- uUUAuaUGa-GGGCGCG-GCCGaCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.