miRNA display CGI


Results 41 - 60 of 636 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6478 5' -62.6 NC_001847.1 + 51061 0.66 0.597076
Target:  5'- aGCA-GGcCACCgaGGCGuUCGUGCGCGg- -3'
miRNA:   3'- -CGUaCC-GUGG--CCGCcAGCGCGCGCga -5'
6478 5' -62.6 NC_001847.1 + 88576 0.66 0.591186
Target:  5'- ---nGGCgcgagagauguaacgGCCGcGCGGcuggaggaccUCGCGCGCGCc -3'
miRNA:   3'- cguaCCG---------------UGGC-CGCC----------AGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 55731 0.66 0.587264
Target:  5'- cUcgGGCGCCacGGUGGuccggcUCGCGCccGCGCg -3'
miRNA:   3'- cGuaCCGUGG--CCGCC------AGCGCG--CGCGa -5'
6478 5' -62.6 NC_001847.1 + 2369 0.66 0.587264
Target:  5'- cGCGUcGGCGgCGGCGGcuuuUCGC-CgGCGCc -3'
miRNA:   3'- -CGUA-CCGUgGCCGCC----AGCGcG-CGCGa -5'
6478 5' -62.6 NC_001847.1 + 27867 0.66 0.587264
Target:  5'- cGCGgggGGCGCCGaggacGCGGacgUCGCggaGUGCGCc -3'
miRNA:   3'- -CGUa--CCGUGGC-----CGCC---AGCG---CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 99203 0.66 0.587264
Target:  5'- aGCA--GCGCCcaGGCGcaaGCGCGCGCg -3'
miRNA:   3'- -CGUacCGUGG--CCGCcagCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 1154 0.66 0.587264
Target:  5'- cGCGcGGCuCCGGCaG-CGCGgcCGCGCa -3'
miRNA:   3'- -CGUaCCGuGGCCGcCaGCGC--GCGCGa -5'
6478 5' -62.6 NC_001847.1 + 68931 0.66 0.587264
Target:  5'- ---cGGCG-CGGCGGcCGCGgGCuGCg -3'
miRNA:   3'- cguaCCGUgGCCGCCaGCGCgCG-CGa -5'
6478 5' -62.6 NC_001847.1 + 38944 0.66 0.587264
Target:  5'- cCcgGGC-CCGGgGGcCGCGaGCGCc -3'
miRNA:   3'- cGuaCCGuGGCCgCCaGCGCgCGCGa -5'
6478 5' -62.6 NC_001847.1 + 57926 0.66 0.587264
Target:  5'- uCcgGGC-CCGGCGGcccgcggcuccgUCGCGgGCaGCa -3'
miRNA:   3'- cGuaCCGuGGCCGCC------------AGCGCgCG-CGa -5'
6478 5' -62.6 NC_001847.1 + 84029 0.66 0.587264
Target:  5'- -gGUGGUcgaCGGCGaGcUCGCGCGCGa- -3'
miRNA:   3'- cgUACCGug-GCCGC-C-AGCGCGCGCga -5'
6478 5' -62.6 NC_001847.1 + 36840 0.66 0.587264
Target:  5'- ---gGGgGCUGGCGGaCGUGCGCucgGCg -3'
miRNA:   3'- cguaCCgUGGCCGCCaGCGCGCG---CGa -5'
6478 5' -62.6 NC_001847.1 + 34832 0.66 0.587264
Target:  5'- aCcgGGCGCUGGaGG-CGaGCGCGCa -3'
miRNA:   3'- cGuaCCGUGGCCgCCaGCgCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 12889 0.66 0.587264
Target:  5'- -aGUGGUACgGcagcacGCGGaaGCGCGCGCc -3'
miRNA:   3'- cgUACCGUGgC------CGCCagCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 105182 0.66 0.587264
Target:  5'- cGCGUcGGCGgCGGCGGcuuuUCGC-CgGCGCc -3'
miRNA:   3'- -CGUA-CCGUgGCCGCC----AGCGcG-CGCGa -5'
6478 5' -62.6 NC_001847.1 + 103967 0.66 0.587264
Target:  5'- cGCGcGGCuCCGGCaG-CGCGgcCGCGCa -3'
miRNA:   3'- -CGUaCCGuGGCCGcCaGCGC--GCGCGa -5'
6478 5' -62.6 NC_001847.1 + 130680 0.66 0.587264
Target:  5'- cGCGgggGGCGCCGaggacGCGGacgUCGCggaGUGCGCc -3'
miRNA:   3'- -CGUa--CCGUGGC-----CGCC---AGCG---CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 79300 0.66 0.587264
Target:  5'- ---cGGCGCCGGCuGgcaGCuGCGCGUc -3'
miRNA:   3'- cguaCCGUGGCCGcCag-CG-CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 44900 0.66 0.587264
Target:  5'- aCGU-GCugCGGaCGGggGCGUGCGCg -3'
miRNA:   3'- cGUAcCGugGCC-GCCagCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 100367 0.66 0.587264
Target:  5'- aGCcgcGCGCC-GCGGcCGCGgCGCGCa -3'
miRNA:   3'- -CGuacCGUGGcCGCCaGCGC-GCGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.