miRNA display CGI


Results 21 - 40 of 636 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6478 5' -62.6 NC_001847.1 + 4071 0.66 0.606912
Target:  5'- ---cGGUACCgaGGCGGUUGCuGC-CGCa -3'
miRNA:   3'- cguaCCGUGG--CCGCCAGCG-CGcGCGa -5'
6478 5' -62.6 NC_001847.1 + 4121 0.74 0.216652
Target:  5'- aGCGaGGCACacaGGCGGUCGUGCGaGUc -3'
miRNA:   3'- -CGUaCCGUGg--CCGCCAGCGCGCgCGa -5'
6478 5' -62.6 NC_001847.1 + 4628 0.71 0.312758
Target:  5'- cGCGggcGGCccGCCGGCGcUCGCGCGC-CUc -3'
miRNA:   3'- -CGUa--CCG--UGGCCGCcAGCGCGCGcGA- -5'
6478 5' -62.6 NC_001847.1 + 4876 0.67 0.510333
Target:  5'- gGCGgcgGGCAgCGGCaGGgccccCGCGC-CGCUg -3'
miRNA:   3'- -CGUa--CCGUgGCCG-CCa----GCGCGcGCGA- -5'
6478 5' -62.6 NC_001847.1 + 5223 0.77 0.120378
Target:  5'- ---cGGCgGCCGGCGGg-GCGCGCGCg -3'
miRNA:   3'- cguaCCG-UGGCCGCCagCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 5367 0.67 0.526378
Target:  5'- gGCcgGGCccaggcuCCGGCGGUCcgagcgGCcggcggcacaggccGCGCGCUc -3'
miRNA:   3'- -CGuaCCGu------GGCCGCCAG------CG--------------CGCGCGA- -5'
6478 5' -62.6 NC_001847.1 + 5620 0.79 0.095842
Target:  5'- gGCGUgGGCGCC-GCGGUccCGCGCGCGCc -3'
miRNA:   3'- -CGUA-CCGUGGcCGCCA--GCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 5859 0.66 0.567737
Target:  5'- cGCcUGGC-CCucgaGGUGGUCcaGCGCuGCGCg -3'
miRNA:   3'- -CGuACCGuGG----CCGCCAG--CGCG-CGCGa -5'
6478 5' -62.6 NC_001847.1 + 6499 0.67 0.510333
Target:  5'- cGUA-GGUAgCGGC-GUCGCcgGCGCGCUc -3'
miRNA:   3'- -CGUaCCGUgGCCGcCAGCG--CGCGCGA- -5'
6478 5' -62.6 NC_001847.1 + 6687 0.76 0.154416
Target:  5'- ---cGGCgGCCGGcCGGgCGCGCGCGCa -3'
miRNA:   3'- cguaCCG-UGGCC-GCCaGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 6893 0.7 0.341344
Target:  5'- aGCAguGCGUCGGCGaG-CGCGCGCGCg -3'
miRNA:   3'- -CGUacCGUGGCCGC-CaGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 7227 0.67 0.507522
Target:  5'- cCAUGGCGCUgcagcggcuggucgGGUGGcugUGCGgGCGCg -3'
miRNA:   3'- cGUACCGUGG--------------CCGCCa--GCGCgCGCGa -5'
6478 5' -62.6 NC_001847.1 + 7411 0.71 0.336938
Target:  5'- gGCAgacGGCACgCGGCGGcuugccaaggcgcagUCGCuaGCGCg -3'
miRNA:   3'- -CGUa--CCGUG-GCCGCC---------------AGCGcgCGCGa -5'
6478 5' -62.6 NC_001847.1 + 7851 0.66 0.558033
Target:  5'- ---cGGCACCGcCGGUgGCGCcUGCa -3'
miRNA:   3'- cguaCCGUGGCcGCCAgCGCGcGCGa -5'
6478 5' -62.6 NC_001847.1 + 7903 0.67 0.50099
Target:  5'- cGCggGGCGCgCGGCGGcCGC-CGCu-- -3'
miRNA:   3'- -CGuaCCGUG-GCCGCCaGCGcGCGcga -5'
6478 5' -62.6 NC_001847.1 + 8461 0.68 0.491724
Target:  5'- gGCAUGGCAauaucguacCCGGCGuccucGUCGCGUuuggGgGCg -3'
miRNA:   3'- -CGUACCGU---------GGCCGC-----CAGCGCG----CgCGa -5'
6478 5' -62.6 NC_001847.1 + 8466 0.66 0.606912
Target:  5'- ---cGGCGCCGGgcCGGggGCG-GCGCUc -3'
miRNA:   3'- cguaCCGUGGCC--GCCagCGCgCGCGA- -5'
6478 5' -62.6 NC_001847.1 + 10028 0.67 0.535904
Target:  5'- uGCAUcGcCACCGGCuccgcguucgucacGGccgacaCGCGCGCGCUg -3'
miRNA:   3'- -CGUAcC-GUGGCCG--------------CCa-----GCGCGCGCGA- -5'
6478 5' -62.6 NC_001847.1 + 10572 0.85 0.0357
Target:  5'- gGCccGGCGCCGGCGGccccccCGCGCGCGCg -3'
miRNA:   3'- -CGuaCCGUGGCCGCCa-----GCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 10607 0.66 0.576506
Target:  5'- ---cGGCGCCGGCc--CGCGCccugcugGCGCUg -3'
miRNA:   3'- cguaCCGUGGCCGccaGCGCG-------CGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.