miRNA display CGI


Results 1 - 20 of 636 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6478 5' -62.6 NC_001847.1 + 483 0.71 0.312758
Target:  5'- aGCAgcGGCGgCGGCGGggCGgcCGCGCGCc -3'
miRNA:   3'- -CGUa-CCGUgGCCGCCa-GC--GCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 576 0.65 0.613809
Target:  5'- cGCGUcuccGGCGCCGgguccuggcccuccGCGGcCGCuccgcagcgGCGCGCg -3'
miRNA:   3'- -CGUA----CCGUGGC--------------CGCCaGCG---------CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 1091 0.72 0.286025
Target:  5'- cGCcgGGCGCC-GCGGcCGCGgGCGg- -3'
miRNA:   3'- -CGuaCCGUGGcCGCCaGCGCgCGCga -5'
6478 5' -62.6 NC_001847.1 + 1154 0.66 0.587264
Target:  5'- cGCGcGGCuCCGGCaG-CGCGgcCGCGCa -3'
miRNA:   3'- -CGUaCCGuGGCCGcCaGCGC--GCGCGa -5'
6478 5' -62.6 NC_001847.1 + 1208 0.68 0.491724
Target:  5'- cGUcgGGCGCCaGCuccaGCGCGCGCc -3'
miRNA:   3'- -CGuaCCGUGGcCGccagCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 1417 0.71 0.319731
Target:  5'- gGCAcgGGCACC-GCGGU-GCGCGgGCc -3'
miRNA:   3'- -CGUa-CCGUGGcCGCCAgCGCGCgCGa -5'
6478 5' -62.6 NC_001847.1 + 2032 0.69 0.426718
Target:  5'- aGCAcGGCGCCGGCcguggccacgauagGGUCuuugguGCGCagGCGCa -3'
miRNA:   3'- -CGUaCCGUGGCCG--------------CCAG------CGCG--CGCGa -5'
6478 5' -62.6 NC_001847.1 + 2329 0.69 0.395773
Target:  5'- cGCGggcgGGCAgCGGCGGcuccCGC-CGCGCc -3'
miRNA:   3'- -CGUa---CCGUgGCCGCCa---GCGcGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 2369 0.66 0.587264
Target:  5'- cGCGUcGGCGgCGGCGGcuuuUCGC-CgGCGCc -3'
miRNA:   3'- -CGUA-CCGUgGCCGCC----AGCGcG-CGCGa -5'
6478 5' -62.6 NC_001847.1 + 2823 0.75 0.187693
Target:  5'- cGCGccGGCaccuccGCCGGCGGgcugaacagCGCGCGCGCc -3'
miRNA:   3'- -CGUa-CCG------UGGCCGCCa--------GCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 2940 0.67 0.529229
Target:  5'- aGCGcGGCcgccuccaGCgCGGCGGcCGCcucgGCGCGCa -3'
miRNA:   3'- -CGUaCCG--------UG-GCCGCCaGCG----CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 2984 0.73 0.255184
Target:  5'- cGCcgGG-GCCGGCGcuggaGcCGCGCGCGCUc -3'
miRNA:   3'- -CGuaCCgUGGCCGC-----CaGCGCGCGCGA- -5'
6478 5' -62.6 NC_001847.1 + 3150 0.75 0.187693
Target:  5'- ---cGGCGCCGGCGG-CGCgGCGgGCc -3'
miRNA:   3'- cguaCCGUGGCCGCCaGCG-CGCgCGa -5'
6478 5' -62.6 NC_001847.1 + 3260 0.73 0.23089
Target:  5'- gGCAggGGCGCCGGCGccgCGCggccggcgagcacgGCGCGCa -3'
miRNA:   3'- -CGUa-CCGUGGCCGCca-GCG--------------CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 3480 0.67 0.537817
Target:  5'- cCAUGGCguccccgACCGGCGG-CaGCG-GCGCc -3'
miRNA:   3'- cGUACCG-------UGGCCGCCaG-CGCgCGCGa -5'
6478 5' -62.6 NC_001847.1 + 3711 0.67 0.50099
Target:  5'- ---aGGCG-CGGCaaUCGCGCGCGCc -3'
miRNA:   3'- cguaCCGUgGCCGccAGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 3810 0.71 0.334024
Target:  5'- gGCcgGGCGgCGGCGG-CGCGC-UGCc -3'
miRNA:   3'- -CGuaCCGUgGCCGCCaGCGCGcGCGa -5'
6478 5' -62.6 NC_001847.1 + 3877 0.68 0.482537
Target:  5'- ---cGGCGgCGGCccGUCGCGCgGCGCc -3'
miRNA:   3'- cguaCCGUgGCCGc-CAGCGCG-CGCGa -5'
6478 5' -62.6 NC_001847.1 + 3913 0.72 0.292535
Target:  5'- aGCGcgGGCGCCGGuuG-CGCGCccGCGCUg -3'
miRNA:   3'- -CGUa-CCGUGGCCgcCaGCGCG--CGCGA- -5'
6478 5' -62.6 NC_001847.1 + 3971 0.79 0.091071
Target:  5'- gGCGgcgagGGCGCCGGgGGcCGgGCGCGCg -3'
miRNA:   3'- -CGUa----CCGUGGCCgCCaGCgCGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.