Results 1 - 20 of 636 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6478 | 5' | -62.6 | NC_001847.1 | + | 35922 | 0.97 | 0.004981 |
Target: 5'- gGCAUGG-ACCGGCGGUCGCGCGCGCUu -3' miRNA: 3'- -CGUACCgUGGCCGCCAGCGCGCGCGA- -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 58006 | 0.92 | 0.011713 |
Target: 5'- cGCA-GGCGgCGGCGGUCGCGCGCGCg -3' miRNA: 3'- -CGUaCCGUgGCCGCCAGCGCGCGCGa -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 55451 | 0.88 | 0.023389 |
Target: 5'- cGCcUGGCGCCGGCGGggcgCGCGCcGCGCUa -3' miRNA: 3'- -CGuACCGUGGCCGCCa---GCGCG-CGCGA- -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 10572 | 0.85 | 0.0357 |
Target: 5'- gGCccGGCGCCGGCGGccccccCGCGCGCGCg -3' miRNA: 3'- -CGuaCCGUGGCCGCCa-----GCGCGCGCGa -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 113385 | 0.85 | 0.0357 |
Target: 5'- gGCccGGCGCCGGCGGccccccCGCGCGCGCg -3' miRNA: 3'- -CGuaCCGUGGCCGCCa-----GCGCGCGCGa -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 18215 | 0.83 | 0.052911 |
Target: 5'- gGC-UGGCGgucucUCGGCGGUCGUGCGCGCg -3' miRNA: 3'- -CGuACCGU-----GGCCGCCAGCGCGCGCGa -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 76417 | 0.82 | 0.057216 |
Target: 5'- gGCGggGGCACCccgcGGCGGgagCGCGCGCGCg -3' miRNA: 3'- -CGUa-CCGUGG----CCGCCa--GCGCGCGCGa -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 33149 | 0.82 | 0.060272 |
Target: 5'- cGCGUGGCgaGCgCGGCGGUUGCGC-CGCUg -3' miRNA: 3'- -CGUACCG--UG-GCCGCCAGCGCGcGCGA- -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 69445 | 0.8 | 0.07609 |
Target: 5'- -gGUGGCGgaCGGCGG-CGCGCGCGCg -3' miRNA: 3'- cgUACCGUg-GCCGCCaGCGCGCGCGa -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 89119 | 0.8 | 0.078076 |
Target: 5'- aGCGccGCcCCGGUGGUCGUGCGCGCg -3' miRNA: 3'- -CGUacCGuGGCCGCCAGCGCGCGCGa -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 3971 | 0.79 | 0.091071 |
Target: 5'- gGCGgcgagGGCGCCGGgGGcCGgGCGCGCg -3' miRNA: 3'- -CGUa----CCGUGGCCgCCaGCgCGCGCGa -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 5620 | 0.79 | 0.095842 |
Target: 5'- gGCGUgGGCGCC-GCGGUccCGCGCGCGCc -3' miRNA: 3'- -CGUA-CCGUGGcCGCCA--GCGCGCGCGa -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 95284 | 0.79 | 0.095842 |
Target: 5'- cGCGUGGacgaagccUACCGGCGGcUgGCGCGCGCc -3' miRNA: 3'- -CGUACC--------GUGGCCGCC-AgCGCGCGCGa -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 45296 | 0.78 | 0.103444 |
Target: 5'- ---cGGCcuugcaGCCGGCGGUCGCagGCGCGCg -3' miRNA: 3'- cguaCCG------UGGCCGCCAGCG--CGCGCGa -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 116158 | 0.78 | 0.106102 |
Target: 5'- ---aGGCGCUGGCGGcCGCGgGCGCc -3' miRNA: 3'- cguaCCGUGGCCGCCaGCGCgCGCGa -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 61448 | 0.78 | 0.106102 |
Target: 5'- cGCcgGGCGCggcgaGGCGGUCGCGCagcaGCGCc -3' miRNA: 3'- -CGuaCCGUGg----CCGCCAGCGCG----CGCGa -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 59845 | 0.78 | 0.108549 |
Target: 5'- cGCggGGCACCGGCcaggcgcGGUCGCcgagggccgGCGCGCg -3' miRNA: 3'- -CGuaCCGUGGCCG-------CCAGCG---------CGCGCGa -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 66202 | 0.78 | 0.111329 |
Target: 5'- cGCAUcGGCGCCgcccagcGGCGGcUCGgGCGCGCg -3' miRNA: 3'- -CGUA-CCGUGG-------CCGCC-AGCgCGCGCGa -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 61264 | 0.78 | 0.111611 |
Target: 5'- cGCggGGCGCCGGCGGaacugaCGCGCcccGCGCa -3' miRNA: 3'- -CGuaCCGUGGCCGCCa-----GCGCG---CGCGa -5' |
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6478 | 5' | -62.6 | NC_001847.1 | + | 77061 | 0.78 | 0.111611 |
Target: 5'- gGCGcGGCACCcgcuGCGG-CGCGCGCGCg -3' miRNA: 3'- -CGUaCCGUGGc---CGCCaGCGCGCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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