miRNA display CGI


Results 1 - 20 of 636 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6478 5' -62.6 NC_001847.1 + 60299 0.77 0.133066
Target:  5'- aGCggGGCgGCgGGCGGcagCGCGCGCGCc -3'
miRNA:   3'- -CGuaCCG-UGgCCGCCa--GCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 78640 0.78 0.111611
Target:  5'- uGCuuuuUGGCGgC-GCGGUCGCGCGCGCc -3'
miRNA:   3'- -CGu---ACCGUgGcCGCCAGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 81439 0.78 0.114465
Target:  5'- cGCGaGcCGCCGGCGGcgcgcUCGCGCGCGCa -3'
miRNA:   3'- -CGUaCcGUGGCCGCC-----AGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 108036 0.77 0.120378
Target:  5'- ---cGGCgGCCGGCGGg-GCGCGCGCg -3'
miRNA:   3'- cguaCCG-UGGCCGCCagCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 10854 0.77 0.126575
Target:  5'- cGCGUGGCcgagGCgCGGCGGgCGCGgGCGCc -3'
miRNA:   3'- -CGUACCG----UG-GCCGCCaGCGCgCGCGa -5'
6478 5' -62.6 NC_001847.1 + 124547 0.77 0.126575
Target:  5'- cGCGggccGGCGCCGGCc--CGCGCGCGCg -3'
miRNA:   3'- -CGUa---CCGUGGCCGccaGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 119877 0.77 0.129783
Target:  5'- gGCAUugcGGCugCGGCGaUCGCGUGCGUg -3'
miRNA:   3'- -CGUA---CCGugGCCGCcAGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 43694 0.77 0.133066
Target:  5'- cGCcgGcGCACUGGCGuGcuUUGCGCGCGCUg -3'
miRNA:   3'- -CGuaC-CGUGGCCGC-C--AGCGCGCGCGA- -5'
6478 5' -62.6 NC_001847.1 + 53002 0.77 0.133066
Target:  5'- gGCAUGGCggagccgacAgCGGCGGcCGCuGCGCGCUc -3'
miRNA:   3'- -CGUACCG---------UgGCCGCCaGCG-CGCGCGA- -5'
6478 5' -62.6 NC_001847.1 + 77061 0.78 0.111611
Target:  5'- gGCGcGGCACCcgcuGCGG-CGCGCGCGCg -3'
miRNA:   3'- -CGUaCCGUGGc---CGCCaGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 59845 0.78 0.108549
Target:  5'- cGCggGGCACCGGCcaggcgcGGUCGCcgagggccgGCGCGCg -3'
miRNA:   3'- -CGuaCCGUGGCCG-------CCAGCG---------CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 45296 0.78 0.103444
Target:  5'- ---cGGCcuugcaGCCGGCGGUCGCagGCGCGCg -3'
miRNA:   3'- cguaCCG------UGGCCGCCAGCG--CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 113385 0.85 0.0357
Target:  5'- gGCccGGCGCCGGCGGccccccCGCGCGCGCg -3'
miRNA:   3'- -CGuaCCGUGGCCGCCa-----GCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 18215 0.83 0.052911
Target:  5'- gGC-UGGCGgucucUCGGCGGUCGUGCGCGCg -3'
miRNA:   3'- -CGuACCGU-----GGCCGCCAGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 76417 0.82 0.057216
Target:  5'- gGCGggGGCACCccgcGGCGGgagCGCGCGCGCg -3'
miRNA:   3'- -CGUa-CCGUGG----CCGCCa--GCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 33149 0.82 0.060272
Target:  5'- cGCGUGGCgaGCgCGGCGGUUGCGC-CGCUg -3'
miRNA:   3'- -CGUACCG--UG-GCCGCCAGCGCGcGCGA- -5'
6478 5' -62.6 NC_001847.1 + 69445 0.8 0.07609
Target:  5'- -gGUGGCGgaCGGCGG-CGCGCGCGCg -3'
miRNA:   3'- cgUACCGUg-GCCGCCaGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 89119 0.8 0.078076
Target:  5'- aGCGccGCcCCGGUGGUCGUGCGCGCg -3'
miRNA:   3'- -CGUacCGuGGCCGCCAGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 5620 0.79 0.095842
Target:  5'- gGCGUgGGCGCC-GCGGUccCGCGCGCGCc -3'
miRNA:   3'- -CGUA-CCGUGGcCGCCA--GCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 95284 0.79 0.095842
Target:  5'- cGCGUGGacgaagccUACCGGCGGcUgGCGCGCGCc -3'
miRNA:   3'- -CGUACC--------GUGGCCGCC-AgCGCGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.