miRNA display CGI


Results 1 - 20 of 636 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6478 5' -62.6 NC_001847.1 + 576 0.65 0.613809
Target:  5'- cGCGUcuccGGCGCCGgguccuggcccuccGCGGcCGCuccgcagcgGCGCGCg -3'
miRNA:   3'- -CGUA----CCGUGGC--------------CGCCaGCG---------CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 103389 0.65 0.613809
Target:  5'- cGCGUcuccGGCGCCGgguccuggcccuccGCGGcCGCuccgcagcgGCGCGCg -3'
miRNA:   3'- -CGUA----CCGUGGC--------------CGCCaGCG---------CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 91541 0.65 0.613809
Target:  5'- cCGUGGCcagcACCGGCcccagcgccacgcuGGggCGCGCGuCGCc -3'
miRNA:   3'- cGUACCG----UGGCCG--------------CCa-GCGCGC-GCGa -5'
6478 5' -62.6 NC_001847.1 + 50962 0.66 0.566764
Target:  5'- uGC-UGGCGCacgacgcccaguCGGCGG-CGCagcucgaGCGCGCg -3'
miRNA:   3'- -CGuACCGUG------------GCCGCCaGCG-------CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 30916 0.66 0.555131
Target:  5'- gGCGc-GCGCCGGCGGugcggcggaggccuUCGCauaaacggcgcuGCGCGCg -3'
miRNA:   3'- -CGUacCGUGGCCGCC--------------AGCG------------CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 94279 0.66 0.558033
Target:  5'- ---cGGCucacuuCCGGCGuUCGCGCGUaGCa -3'
miRNA:   3'- cguaCCGu-----GGCCGCcAGCGCGCG-CGa -5'
6478 5' -62.6 NC_001847.1 + 86435 0.66 0.558033
Target:  5'- ---cGGCGCUGcGCGG-CGCGgGCaGCg -3'
miRNA:   3'- cguaCCGUGGC-CGCCaGCGCgCG-CGa -5'
6478 5' -62.6 NC_001847.1 + 50741 0.66 0.567737
Target:  5'- gGCugcGGCACCGGCugccccGGUUugGCGCGCc -3'
miRNA:   3'- -CGua-CCGUGGCCG------CCAGcgCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 35175 0.66 0.558033
Target:  5'- cGCcgggGGCACgCGGCcuucgaGGaggaGCGCGCGCg -3'
miRNA:   3'- -CGua--CCGUG-GCCG------CCag--CGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 5859 0.66 0.567737
Target:  5'- cGCcUGGC-CCucgaGGUGGUCcaGCGCuGCGCg -3'
miRNA:   3'- -CGuACCGuGG----CCGCCAG--CGCG-CGCGa -5'
6478 5' -62.6 NC_001847.1 + 74289 0.66 0.558033
Target:  5'- cGCGcUGGCcUCGGCGGgCGCGgaGCuGCUg -3'
miRNA:   3'- -CGU-ACCGuGGCCGCCaGCGCg-CG-CGA- -5'
6478 5' -62.6 NC_001847.1 + 7851 0.66 0.558033
Target:  5'- ---cGGCACCGcCGGUgGCGCcUGCa -3'
miRNA:   3'- cguaCCGUGGCcGCCAgCGCGcGCGa -5'
6478 5' -62.6 NC_001847.1 + 134188 0.66 0.567737
Target:  5'- cCcgGGUGCCGGCGcaGUCguccccggGCGCGgGCUc -3'
miRNA:   3'- cGuaCCGUGGCCGC--CAG--------CGCGCgCGA- -5'
6478 5' -62.6 NC_001847.1 + 92174 0.66 0.566764
Target:  5'- cCcgGGCcgGCCGGCGGccCGCcccccccGCGCGCn -3'
miRNA:   3'- cGuaCCG--UGGCCGCCa-GCG-------CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 105796 0.66 0.558033
Target:  5'- cGCcgGG-GCCGcGCGcuggaGcCGCGCGCGCUc -3'
miRNA:   3'- -CGuaCCgUGGC-CGC-----CaGCGCGCGCGA- -5'
6478 5' -62.6 NC_001847.1 + 120596 0.66 0.558033
Target:  5'- cGCGUcGGCAUcuaCGGCGGcacCGCGgGCaGCg -3'
miRNA:   3'- -CGUA-CCGUG---GCCGCCa--GCGCgCG-CGa -5'
6478 5' -62.6 NC_001847.1 + 31148 0.66 0.567737
Target:  5'- uGCGgcUGGCcuucGCgGGCGGcgUCGaCGCcGCGCUg -3'
miRNA:   3'- -CGU--ACCG----UGgCCGCC--AGC-GCG-CGCGA- -5'
6478 5' -62.6 NC_001847.1 + 81704 0.66 0.567737
Target:  5'- uGCGcGcGCugCGGCa--CGCGCGCGCc -3'
miRNA:   3'- -CGUaC-CGugGCCGccaGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 36988 0.66 0.567737
Target:  5'- aGCGggcccGCGCCGaGCGGcggCG-GCGCGCUc -3'
miRNA:   3'- -CGUac---CGUGGC-CGCCa--GCgCGCGCGA- -5'
6478 5' -62.6 NC_001847.1 + 44829 0.66 0.558033
Target:  5'- ---cGGCcCCGGCGGcCccaccgaaCGCGCGCUc -3'
miRNA:   3'- cguaCCGuGGCCGCCaGc-------GCGCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.