miRNA display CGI


Results 61 - 80 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 46343 0.67 0.713613
Target:  5'- cGGGGCcgcgUCGGCgGCAucggggGGCUCCucGGCg-- -3'
miRNA:   3'- -CCCCG----AGCCG-CGU------UUGAGGu-CCGauu -5'
6479 3' -57.8 NC_001847.1 + 47001 0.67 0.713613
Target:  5'- uGGGGCUCGcgaaGCGCGccuuguGGCUCaucagCAGGCg-- -3'
miRNA:   3'- -CCCCGAGC----CGCGU------UUGAG-----GUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 48798 0.67 0.712606
Target:  5'- cGGGCgccucgcCGGCGCcaucgggGAugUCCGGGCc-- -3'
miRNA:   3'- cCCCGa------GCCGCG-------UUugAGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 119110 0.67 0.703515
Target:  5'- cGGGGCggCGGgGCAGGCaUgGGGCc-- -3'
miRNA:   3'- -CCCCGa-GCCgCGUUUGaGgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 79559 0.67 0.703515
Target:  5'- uGGGGCUCGcG-GgGGGCgCCGGGCUc- -3'
miRNA:   3'- -CCCCGAGC-CgCgUUUGaGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 21778 0.67 0.703515
Target:  5'- cGGGCcCGGCGCcgg--CCGGGCg-- -3'
miRNA:   3'- cCCCGaGCCGCGuuugaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 60136 0.67 0.703515
Target:  5'- gGGGGCgUCGGCGCcgaaGAACgCgGGGUg-- -3'
miRNA:   3'- -CCCCG-AGCCGCG----UUUGaGgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 119230 0.67 0.703515
Target:  5'- cGGGGCggCGGgGCAGGCaUgGGGCc-- -3'
miRNA:   3'- -CCCCGa-GCCgCGUUUGaGgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 10002 0.67 0.703515
Target:  5'- cGGcGGCaauucgcauccUCGuGUGCGAggGCUCCGGGCUu- -3'
miRNA:   3'- -CC-CCG-----------AGC-CGCGUU--UGAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 124591 0.67 0.703515
Target:  5'- cGGGCcCGGCGCcgg--CCGGGCg-- -3'
miRNA:   3'- cCCCGaGCCGCGuuugaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 64326 0.67 0.697426
Target:  5'- cGGGGaCUCGGCGCucggcggaucccCUCCcGGCc-- -3'
miRNA:   3'- -CCCC-GAGCCGCGuuu---------GAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 35954 0.67 0.693356
Target:  5'- uGGGCgcugcuggCGGCGCugcuguGGCUCCcgccGGCUGg -3'
miRNA:   3'- cCCCGa-------GCCGCGu-----UUGAGGu---CCGAUu -5'
6479 3' -57.8 NC_001847.1 + 6147 0.67 0.693356
Target:  5'- gGGGGCUCgguGGCGguGACggcgCgCAGGUg-- -3'
miRNA:   3'- -CCCCGAG---CCGCguUUGa---G-GUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 68926 0.67 0.693356
Target:  5'- -aGGUUCGGCGCGgcGGC-CgCGGGCUGc -3'
miRNA:   3'- ccCCGAGCCGCGU--UUGaG-GUCCGAUu -5'
6479 3' -57.8 NC_001847.1 + 134172 0.67 0.693356
Target:  5'- cGGGC-CGGCGCAuaGACgCCcGGCg-- -3'
miRNA:   3'- cCCCGaGCCGCGU--UUGaGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 19775 0.68 0.687235
Target:  5'- cGGGCUCGGCGCAGucaucagcaucgucgGCgg-AGGCg-- -3'
miRNA:   3'- cCCCGAGCCGCGUU---------------UGaggUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 31012 0.68 0.683145
Target:  5'- uGGGGCUCGGgGagcCGGACUUCguggaGGGCg-- -3'
miRNA:   3'- -CCCCGAGCCgC---GUUUGAGG-----UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 133825 0.68 0.683145
Target:  5'- uGGGGCUCGGgGagcCGGACUUCguggaGGGCg-- -3'
miRNA:   3'- -CCCCGAGCCgC---GUUUGAGG-----UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 118881 0.68 0.672891
Target:  5'- cGGGcGCUCGGUGCAcggGGC-CgGGGCc-- -3'
miRNA:   3'- -CCC-CGAGCCGCGU---UUGaGgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 92038 0.68 0.672891
Target:  5'- cGGGCaccgcCGGCGC---CUCCGGGCg-- -3'
miRNA:   3'- cCCCGa----GCCGCGuuuGAGGUCCGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.