miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 34179 0.66 0.761889
Target:  5'- cGGaGCUCGGCGCcGAGCcCCGcuguuaccgcggcGGCUAc -3'
miRNA:   3'- cCC-CGAGCCGCG-UUUGaGGU-------------CCGAUu -5'
6479 3' -57.8 NC_001847.1 + 52507 0.66 0.759966
Target:  5'- cGGGUUCgGGUggcaaaagagcgcgGCAAGCUCCAGcGCg-- -3'
miRNA:   3'- cCCCGAG-CCG--------------CGUUUGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 15647 0.66 0.7532
Target:  5'- cGGGCUCgGGCuCGGGCU-CGGGCUc- -3'
miRNA:   3'- cCCCGAG-CCGcGUUUGAgGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 103117 0.66 0.7532
Target:  5'- gGGGGCUUccccGCGCGAGCg-CGGGCc-- -3'
miRNA:   3'- -CCCCGAGc---CGCGUUUGagGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 95280 0.66 0.74931
Target:  5'- gGGGGCgccggcaagcuugCGGcCGCuggcgcCUCCAGGCg-- -3'
miRNA:   3'- -CCCCGa------------GCC-GCGuuu---GAGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 50316 0.67 0.743442
Target:  5'- gGGGGgUUGuGCGCAcgcaGGCcccCCGGGCUGc -3'
miRNA:   3'- -CCCCgAGC-CGCGU----UUGa--GGUCCGAUu -5'
6479 3' -57.8 NC_001847.1 + 1940 0.67 0.743442
Target:  5'- -cGGCgcgCGGCGCAGAgCUCCuccagcgaGGGCa-- -3'
miRNA:   3'- ccCCGa--GCCGCGUUU-GAGG--------UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 130908 0.67 0.733586
Target:  5'- gGGGGCggCGGUGCc--CUCgGGGCc-- -3'
miRNA:   3'- -CCCCGa-GCCGCGuuuGAGgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 62014 0.67 0.733586
Target:  5'- cGGGGCccugCGGcCGUAugcGGCUCCcGGCg-- -3'
miRNA:   3'- -CCCCGa---GCC-GCGU---UUGAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 10869 0.67 0.733586
Target:  5'- -cGGCg-GGCGCGGGCgcCCAGGCa-- -3'
miRNA:   3'- ccCCGagCCGCGUUUGa-GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 28095 0.67 0.733586
Target:  5'- gGGGGCggCGGUGCc--CUCgGGGCc-- -3'
miRNA:   3'- -CCCCGa-GCCGCGuuuGAGgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 84625 0.67 0.733586
Target:  5'- aGGuGGUcCaGCGCGAACUCCuGGCc-- -3'
miRNA:   3'- -CC-CCGaGcCGCGUUUGAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 126539 0.67 0.733586
Target:  5'- cGGGGCUUGcGCuGCGGcugacGCUCgCGcGGCUAAc -3'
miRNA:   3'- -CCCCGAGC-CG-CGUU-----UGAG-GU-CCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 70259 0.67 0.733586
Target:  5'- cGGGCgcgCGGCGUu-GCUCUcGGCg-- -3'
miRNA:   3'- cCCCGa--GCCGCGuuUGAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 36840 0.67 0.730611
Target:  5'- gGGGGCuggcggacgugcgcUCGGCGgcggcCGAGCUCUacgcgGGGCUGc -3'
miRNA:   3'- -CCCCG--------------AGCCGC-----GUUUGAGG-----UCCGAUu -5'
6479 3' -57.8 NC_001847.1 + 51538 0.67 0.723639
Target:  5'- gGGGGCggcgcccaggcgUCGGCGC-AGCUcgCCAGcGCUu- -3'
miRNA:   3'- -CCCCG------------AGCCGCGuUUGA--GGUC-CGAuu -5'
6479 3' -57.8 NC_001847.1 + 3817 0.67 0.723639
Target:  5'- cGGGGCgUCGGcCGCGAGCgu--GGCg-- -3'
miRNA:   3'- -CCCCG-AGCC-GCGUUUGagguCCGauu -5'
6479 3' -57.8 NC_001847.1 + 124444 0.67 0.723639
Target:  5'- -uGGC-CGGCGCGGGCcgcgcCCGGGCg-- -3'
miRNA:   3'- ccCCGaGCCGCGUUUGa----GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 21631 0.67 0.723639
Target:  5'- -uGGC-CGGCGCGGGCcgcgcCCGGGCg-- -3'
miRNA:   3'- ccCCGaGCCGCGUUUGa----GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 32860 0.67 0.713613
Target:  5'- cGGcGCUCGcGCGCGAGaUCCuGGCg-- -3'
miRNA:   3'- cCC-CGAGC-CGCGUUUgAGGuCCGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.