miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 73190 0.66 0.791046
Target:  5'- cGGGCaCGGCGC--GCgggCAGGCUGc -3'
miRNA:   3'- cCCCGaGCCGCGuuUGag-GUCCGAUu -5'
6479 3' -57.8 NC_001847.1 + 55678 0.66 0.791046
Target:  5'- -cGGCUC-GCGCAGGCggCCGGGgaAAa -3'
miRNA:   3'- ccCCGAGcCGCGUUUGa-GGUCCgaUU- -5'
6479 3' -57.8 NC_001847.1 + 15020 0.66 0.781781
Target:  5'- uGGGGC-C-GCGCGAGCcgcggccgCCGGGCg-- -3'
miRNA:   3'- -CCCCGaGcCGCGUUUGa-------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 36210 0.66 0.791046
Target:  5'- aGGGGCU--GCGCGccCUCCuGGCg-- -3'
miRNA:   3'- -CCCCGAgcCGCGUuuGAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 69142 0.66 0.800165
Target:  5'- -uGGCgCGGCGUccgcCUUCGGGCUGAa -3'
miRNA:   3'- ccCCGaGCCGCGuuu-GAGGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 1940 0.67 0.743442
Target:  5'- -cGGCgcgCGGCGCAGAgCUCCuccagcgaGGGCa-- -3'
miRNA:   3'- ccCCGa--GCCGCGUUU-GAGG--------UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 10869 0.67 0.733586
Target:  5'- -cGGCg-GGCGCGGGCgcCCAGGCa-- -3'
miRNA:   3'- ccCCGagCCGCGUUUGa-GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 130908 0.67 0.733586
Target:  5'- gGGGGCggCGGUGCc--CUCgGGGCc-- -3'
miRNA:   3'- -CCCCGa-GCCGCGuuuGAGgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 36840 0.67 0.730611
Target:  5'- gGGGGCuggcggacgugcgcUCGGCGgcggcCGAGCUCUacgcgGGGCUGc -3'
miRNA:   3'- -CCCCG--------------AGCCGC-----GUUUGAGG-----UCCGAUu -5'
6479 3' -57.8 NC_001847.1 + 124444 0.67 0.723639
Target:  5'- -uGGC-CGGCGCGGGCcgcgcCCGGGCg-- -3'
miRNA:   3'- ccCCGaGCCGCGUUUGa----GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 3817 0.67 0.723639
Target:  5'- cGGGGCgUCGGcCGCGAGCgu--GGCg-- -3'
miRNA:   3'- -CCCCG-AGCC-GCGUUUGagguCCGauu -5'
6479 3' -57.8 NC_001847.1 + 32860 0.67 0.713613
Target:  5'- cGGcGCUCGcGCGCGAGaUCCuGGCg-- -3'
miRNA:   3'- cCC-CGAGC-CGCGUUUgAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 48798 0.67 0.712606
Target:  5'- cGGGCgccucgcCGGCGCcaucgggGAugUCCGGGCc-- -3'
miRNA:   3'- cCCCGa------GCCGCG-------UUugAGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 124591 0.67 0.703515
Target:  5'- cGGGCcCGGCGCcgg--CCGGGCg-- -3'
miRNA:   3'- cCCCGaGCCGCGuuugaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 60136 0.67 0.703515
Target:  5'- gGGGGCgUCGGCGCcgaaGAACgCgGGGUg-- -3'
miRNA:   3'- -CCCCG-AGCCGCG----UUUGaGgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 10002 0.67 0.703515
Target:  5'- cGGcGGCaauucgcauccUCGuGUGCGAggGCUCCGGGCUu- -3'
miRNA:   3'- -CC-CCG-----------AGC-CGCGUU--UGAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 64326 0.67 0.697426
Target:  5'- cGGGGaCUCGGCGCucggcggaucccCUCCcGGCc-- -3'
miRNA:   3'- -CCCC-GAGCCGCGuuu---------GAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 6147 0.67 0.693356
Target:  5'- gGGGGCUCgguGGCGguGACggcgCgCAGGUg-- -3'
miRNA:   3'- -CCCCGAG---CCGCguUUGa---G-GUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 70259 0.67 0.733586
Target:  5'- cGGGCgcgCGGCGUu-GCUCUcGGCg-- -3'
miRNA:   3'- cCCCGa--GCCGCGuuUGAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 50316 0.67 0.743442
Target:  5'- gGGGGgUUGuGCGCAcgcaGGCcccCCGGGCUGc -3'
miRNA:   3'- -CCCCgAGC-CGCGU----UUGa--GGUCCGAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.