miRNA display CGI


Results 41 - 60 of 172 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 59565 0.73 0.365327
Target:  5'- gGGGGCggugcCGGCGgAAGCUCU-GGCUGg -3'
miRNA:   3'- -CCCCGa----GCCGCgUUUGAGGuCCGAUu -5'
6479 3' -57.8 NC_001847.1 + 102869 0.73 0.363707
Target:  5'- gGGGGCggaaauuUCGGCGCGGcgggcccgggcccGCUCUGGGCUc- -3'
miRNA:   3'- -CCCCG-------AGCCGCGUU-------------UGAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 16918 0.74 0.35728
Target:  5'- cGGGccGCUCGGCGCAGACgCCGGuCUGc -3'
miRNA:   3'- -CCC--CGAGCCGCGUUUGaGGUCcGAUu -5'
6479 3' -57.8 NC_001847.1 + 68472 0.74 0.341563
Target:  5'- cGGGGCcccgccgcgCgGGCGCAAGCgcgCCAGGCa-- -3'
miRNA:   3'- -CCCCGa--------G-CCGCGUUUGa--GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 81224 0.74 0.341563
Target:  5'- -aGGCUCGGCgGCAGcggcgGCgggCCAGGCUGGg -3'
miRNA:   3'- ccCCGAGCCG-CGUU-----UGa--GGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 60745 0.7 0.538511
Target:  5'- cGGGCgCGGCGCGguggcgguuuuccAGCUCCAGcGCc-- -3'
miRNA:   3'- cCCCGaGCCGCGU-------------UUGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 56140 0.7 0.548571
Target:  5'- uGGGCUCGGCG-GGGCUCUaccgcacGGGCa-- -3'
miRNA:   3'- cCCCGAGCCGCgUUUGAGG-------UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 52395 0.69 0.621286
Target:  5'- -cGGCcgucuaCGGCGCcguGCUCCAGGCg-- -3'
miRNA:   3'- ccCCGa-----GCCGCGuu-UGAGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 103953 0.69 0.621286
Target:  5'- cGGcGGCgccUCGGCGCGcGGCUCC-GGCa-- -3'
miRNA:   3'- -CC-CCG---AGCCGCGU-UUGAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 75145 0.69 0.621286
Target:  5'- cGGGGC-CGGCGguG-CUCUcGGUUAGg -3'
miRNA:   3'- -CCCCGaGCCGCguUuGAGGuCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 6439 0.69 0.610957
Target:  5'- aGGGGUuaggCGGCGCGGcgacggcguACguggCCAGGCa-- -3'
miRNA:   3'- -CCCCGa---GCCGCGUU---------UGa---GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 127182 0.69 0.604767
Target:  5'- aGGGCccuaaaaacccgcaUGGCGCGAACUCCGGcGCg-- -3'
miRNA:   3'- cCCCGa-------------GCCGCGUUUGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 60245 0.69 0.600645
Target:  5'- aGGGCUagcaCGGCGCcGACUUcgCAGGCg-- -3'
miRNA:   3'- cCCCGA----GCCGCGuUUGAG--GUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 48844 0.69 0.598585
Target:  5'- gGGGGCgccucggccgcgCGGCGCGAGgUaCGGGUUGAa -3'
miRNA:   3'- -CCCCGa-----------GCCGCGUUUgAgGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 132383 0.69 0.590356
Target:  5'- gGGGGCgcCGGCGCcGGCgccgccgcgCCGGGCc-- -3'
miRNA:   3'- -CCCCGa-GCCGCGuUUGa--------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 77462 0.69 0.590356
Target:  5'- cGGGCUgGG-GCGGGCgCCGGGCg-- -3'
miRNA:   3'- cCCCGAgCCgCGUUUGaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 81051 0.69 0.580099
Target:  5'- gGGGGCgacgugGGCGUggGCggggCCuGGCUGGa -3'
miRNA:   3'- -CCCCGag----CCGCGuuUGa---GGuCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 134871 0.7 0.559704
Target:  5'- cGGGCUCGGCG---GCccCCGGGCUc- -3'
miRNA:   3'- cCCCGAGCCGCguuUGa-GGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 23707 0.7 0.549581
Target:  5'- cGGGGCgcggUCGGCGCAGAggucgaUCAGGCg-- -3'
miRNA:   3'- -CCCCG----AGCCGCGUUUga----GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 21873 0.7 0.549581
Target:  5'- gGGGGCUgCGGCGC--GCUgCCgAGGCc-- -3'
miRNA:   3'- -CCCCGA-GCCGCGuuUGA-GG-UCCGauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.