miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 11990 0.7 0.559704
Target:  5'- gGGGGCUC-GCGCAAAC-CCGcuaguuGGCUc- -3'
miRNA:   3'- -CCCCGAGcCGCGUUUGaGGU------CCGAuu -5'
6479 3' -57.8 NC_001847.1 + 32058 0.7 0.559704
Target:  5'- cGGGCUCGGCG---GCccCCGGGCUc- -3'
miRNA:   3'- cCCCGAGCCGCguuUGa-GGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 123482 0.69 0.580099
Target:  5'- cGGGCUCGGCuggggccgccGCAAGCggggCCGGGg--- -3'
miRNA:   3'- cCCCGAGCCG----------CGUUUGa---GGUCCgauu -5'
6479 3' -57.8 NC_001847.1 + 95680 0.69 0.580099
Target:  5'- cGGGGggCGGCGCGGgccGCUCUGGcGCg-- -3'
miRNA:   3'- -CCCCgaGCCGCGUU---UGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 14452 0.69 0.580099
Target:  5'- cGGGGUgcgCGGcCGCGGccucuggguCUCCGGGCUc- -3'
miRNA:   3'- -CCCCGa--GCC-GCGUUu--------GAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 81051 0.69 0.580099
Target:  5'- gGGGGCgacgugGGCGUggGCggggCCuGGCUGGa -3'
miRNA:   3'- -CCCCGag----CCGCGuuUGa---GGuCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 95734 0.69 0.580099
Target:  5'- cGGGGggCGGCGCGGgccGCUCUGGcGCg-- -3'
miRNA:   3'- -CCCCgaGCCGCGUU---UGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 95761 0.69 0.580099
Target:  5'- cGGGGggCGGCGCGGgccGCUCUGGcGCg-- -3'
miRNA:   3'- -CCCCgaGCCGCGUU---UGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 95653 0.69 0.580099
Target:  5'- cGGGGggCGGCGCGGgccGCUCUGGcGCg-- -3'
miRNA:   3'- -CCCCgaGCCGCGUU---UGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 95707 0.69 0.580099
Target:  5'- cGGGGggCGGCGCGGgccGCUCUGGcGCg-- -3'
miRNA:   3'- -CCCCgaGCCGCGUU---UGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 123561 0.69 0.580099
Target:  5'- cGGGGCUUGGgccggggccgcCGCGAGCggggccggaCCGGGCUu- -3'
miRNA:   3'- -CCCCGAGCC-----------GCGUUUGa--------GGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 77462 0.69 0.590356
Target:  5'- cGGGCUgGG-GCGGGCgCCGGGCg-- -3'
miRNA:   3'- cCCCGAgCCgCGUUUGaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 132383 0.69 0.590356
Target:  5'- gGGGGCgcCGGCGCcGGCgccgccgcgCCGGGCc-- -3'
miRNA:   3'- -CCCCGa-GCCGCGuUUGa--------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 119523 0.69 0.590356
Target:  5'- aGGGGCggCGGcCGCGGcCggCAGGCUGGg -3'
miRNA:   3'- -CCCCGa-GCC-GCGUUuGagGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 29570 0.69 0.590356
Target:  5'- gGGGGCgcCGGCGCcGGCgccgccgcgCCGGGCc-- -3'
miRNA:   3'- -CCCCGa-GCCGCGuUUGa--------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 16841 0.69 0.590356
Target:  5'- cGGGCaUCGGgGCGGcGCUCgAGGCg-- -3'
miRNA:   3'- cCCCG-AGCCgCGUU-UGAGgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 48844 0.69 0.598585
Target:  5'- gGGGGCgccucggccgcgCGGCGCGAGgUaCGGGUUGAa -3'
miRNA:   3'- -CCCCGa-----------GCCGCGUUUgAgGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 60245 0.69 0.600645
Target:  5'- aGGGCUagcaCGGCGCcGACUUcgCAGGCg-- -3'
miRNA:   3'- cCCCGA----GCCGCGuUUGAG--GUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 127182 0.69 0.604767
Target:  5'- aGGGCccuaaaaacccgcaUGGCGCGAACUCCGGcGCg-- -3'
miRNA:   3'- cCCCGa-------------GCCGCGUUUGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 24369 0.69 0.604767
Target:  5'- aGGGCccuaaaaacccgcaUGGCGCGAACUCCGGcGCg-- -3'
miRNA:   3'- cCCCGa-------------GCCGCGUUUGAGGUC-CGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.