miRNA display CGI


Results 41 - 60 of 172 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 29570 0.69 0.590356
Target:  5'- gGGGGCgcCGGCGCcGGCgccgccgcgCCGGGCc-- -3'
miRNA:   3'- -CCCCGa-GCCGCGuUUGa--------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 31012 0.68 0.683145
Target:  5'- uGGGGCUCGGgGagcCGGACUUCguggaGGGCg-- -3'
miRNA:   3'- -CCCCGAGCCgC---GUUUGAGG-----UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 31075 0.73 0.398745
Target:  5'- gGGGGCUCGGCGCGccGCUgC-GGCc-- -3'
miRNA:   3'- -CCCCGAGCCGCGUu-UGAgGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 31377 0.69 0.631623
Target:  5'- cGGGuGC-CGGCGCAGucguCcCCGGGCg-- -3'
miRNA:   3'- -CCC-CGaGCCGCGUUu---GaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 32058 0.7 0.559704
Target:  5'- cGGGCUCGGCG---GCccCCGGGCUc- -3'
miRNA:   3'- cCCCGAGCCGCguuUGa-GGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 32095 0.68 0.662603
Target:  5'- cGGGCgUCGGgGCGcgaGGC-CCGGGCUc- -3'
miRNA:   3'- cCCCG-AGCCgCGU---UUGaGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 32860 0.67 0.713613
Target:  5'- cGGcGCUCGcGCGCGAGaUCCuGGCg-- -3'
miRNA:   3'- cCC-CGAGC-CGCGUUUgAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 33026 0.66 0.800165
Target:  5'- cGGGGCgaGGCGCGGACgcggCgCAGGa--- -3'
miRNA:   3'- -CCCCGagCCGCGUUUGa---G-GUCCgauu -5'
6479 3' -57.8 NC_001847.1 + 33224 0.68 0.662603
Target:  5'- -cGGCUUGGCGCc-GCgCCGGGCg-- -3'
miRNA:   3'- ccCCGAGCCGCGuuUGaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 33573 0.71 0.490241
Target:  5'- gGGGGCgucUGGCGC-GGC-CCGGGCUc- -3'
miRNA:   3'- -CCCCGa--GCCGCGuUUGaGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 33681 0.72 0.416172
Target:  5'- cGGGGCUagaGGCGCAGgcGCUCgCGGcGCg-- -3'
miRNA:   3'- -CCCCGAg--CCGCGUU--UGAG-GUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 34179 0.66 0.761889
Target:  5'- cGGaGCUCGGCGCcGAGCcCCGcuguuaccgcggcGGCUAc -3'
miRNA:   3'- cCC-CGAGCCGCG-UUUGaGGU-------------CCGAUu -5'
6479 3' -57.8 NC_001847.1 + 35635 1.08 0.001646
Target:  5'- cGGGGCUCGGCGCAAACUCCAGGCUAAu -3'
miRNA:   3'- -CCCCGAGCCGCGUUUGAGGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 35878 0.71 0.480633
Target:  5'- uGGGC-CGGCGCAAauauACUCCcgcgccGGCUGc -3'
miRNA:   3'- cCCCGaGCCGCGUU----UGAGGu-----CCGAUu -5'
6479 3' -57.8 NC_001847.1 + 35954 0.67 0.693356
Target:  5'- uGGGCgcugcuggCGGCGCugcuguGGCUCCcgccGGCUGg -3'
miRNA:   3'- cCCCGa-------GCCGCGu-----UUGAGGu---CCGAUu -5'
6479 3' -57.8 NC_001847.1 + 36210 0.66 0.791046
Target:  5'- aGGGGCU--GCGCGccCUCCuGGCg-- -3'
miRNA:   3'- -CCCCGAgcCGCGUuuGAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 36840 0.67 0.730611
Target:  5'- gGGGGCuggcggacgugcgcUCGGCGgcggcCGAGCUCUacgcgGGGCUGc -3'
miRNA:   3'- -CCCCG--------------AGCCGC-----GUUUGAGG-----UCCGAUu -5'
6479 3' -57.8 NC_001847.1 + 38503 0.7 0.559704
Target:  5'- cGGGGggCGGCGCGGucgCCGGcGCUGu -3'
miRNA:   3'- -CCCCgaGCCGCGUUugaGGUC-CGAUu -5'
6479 3' -57.8 NC_001847.1 + 39392 0.66 0.800165
Target:  5'- cGGGGagcCGGCGCcgg--CCGGGCUc- -3'
miRNA:   3'- -CCCCga-GCCGCGuuugaGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 39626 0.66 0.800165
Target:  5'- aGGGGCaagccUGGCGCGcccgCCAGGCc-- -3'
miRNA:   3'- -CCCCGa----GCCGCGUuugaGGUCCGauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.