miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 15383 0.69 0.631623
Target:  5'- cGGGGCggUCGGCGUcgGGGCUggggCCGGGUUu- -3'
miRNA:   3'- -CCCCG--AGCCGCG--UUUGA----GGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 15520 0.73 0.4074
Target:  5'- -cGGCUCGGCGgGAGC-CgCGGGCUGc -3'
miRNA:   3'- ccCCGAGCCGCgUUUGaG-GUCCGAUu -5'
6479 3' -57.8 NC_001847.1 + 15647 0.66 0.7532
Target:  5'- cGGGCUCgGGCuCGGGCU-CGGGCUc- -3'
miRNA:   3'- cCCCGAG-CCGcGUUUGAgGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 16841 0.69 0.590356
Target:  5'- cGGGCaUCGGgGCGGcGCUCgAGGCg-- -3'
miRNA:   3'- cCCCG-AGCCgCGUU-UGAGgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 16918 0.74 0.35728
Target:  5'- cGGGccGCUCGGCGCAGACgCCGGuCUGc -3'
miRNA:   3'- -CCC--CGAGCCGCGUUUGaGGUCcGAUu -5'
6479 3' -57.8 NC_001847.1 + 17542 0.68 0.65229
Target:  5'- cGGGucucagagaGCcCGGCGCAGACguuuuggCCGGGCa-- -3'
miRNA:   3'- -CCC---------CGaGCCGCGUUUGa------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 18282 0.72 0.452381
Target:  5'- uGGGGCUgGGUGgAAACUCUucGGCg-- -3'
miRNA:   3'- -CCCCGAgCCGCgUUUGAGGu-CCGauu -5'
6479 3' -57.8 NC_001847.1 + 18777 0.68 0.662603
Target:  5'- cGGcGGC-CGacaGCGCGAGCUCCGcGGCg-- -3'
miRNA:   3'- -CC-CCGaGC---CGCGUUUGAGGU-CCGauu -5'
6479 3' -57.8 NC_001847.1 + 19775 0.68 0.687235
Target:  5'- cGGGCUCGGCGCAGucaucagcaucgucgGCgg-AGGCg-- -3'
miRNA:   3'- cCCCGAGCCGCGUU---------------UGaggUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 20441 0.68 0.64196
Target:  5'- gGGGGCUUGGUGgCuggcGACUCUuuaAGGCg-- -3'
miRNA:   3'- -CCCCGAGCCGC-Gu---UUGAGG---UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 20656 0.66 0.781781
Target:  5'- aGGGGCUCagcagGGCGgAGACguccgCCAG-CUGg -3'
miRNA:   3'- -CCCCGAG-----CCGCgUUUGa----GGUCcGAUu -5'
6479 3' -57.8 NC_001847.1 + 21631 0.67 0.723639
Target:  5'- -uGGC-CGGCGCGGGCcgcgcCCGGGCg-- -3'
miRNA:   3'- ccCCGaGCCGCGUUUGa----GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 21778 0.67 0.703515
Target:  5'- cGGGCcCGGCGCcgg--CCGGGCg-- -3'
miRNA:   3'- cCCCGaGCCGCGuuugaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 21873 0.7 0.549581
Target:  5'- gGGGGCUgCGGCGC--GCUgCCgAGGCc-- -3'
miRNA:   3'- -CCCCGA-GCCGCGuuUGA-GG-UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 23707 0.7 0.549581
Target:  5'- cGGGGCgcggUCGGCGCAGAggucgaUCAGGCg-- -3'
miRNA:   3'- -CCCCG----AGCCGCGUUUga----GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 24369 0.69 0.604767
Target:  5'- aGGGCccuaaaaacccgcaUGGCGCGAACUCCGGcGCg-- -3'
miRNA:   3'- cCCCGa-------------GCCGCGUUUGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 24524 0.66 0.772378
Target:  5'- cGGGGCUCGcGCGCugcacgauUUCCgugcagAGGUUGGa -3'
miRNA:   3'- -CCCCGAGC-CGCGuuu-----GAGG------UCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 26487 0.66 0.772378
Target:  5'- aGGGGCgggccUGGUGCAAgGCgggccugCCGGGCg-- -3'
miRNA:   3'- -CCCCGa----GCCGCGUU-UGa------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 27649 0.66 0.794712
Target:  5'- gGGGGCUCGGaggaagacccggcccUGCucGACgcggcgcgUCGGGCUGAg -3'
miRNA:   3'- -CCCCGAGCC---------------GCGu-UUGa-------GGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 28095 0.67 0.733586
Target:  5'- gGGGGCggCGGUGCc--CUCgGGGCc-- -3'
miRNA:   3'- -CCCCGa-GCCGCGuuuGAGgUCCGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.