miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 58263 0.72 0.416172
Target:  5'- aGGGUUCGGCGCc-AC-CCGGGCa-- -3'
miRNA:   3'- cCCCGAGCCGCGuuUGaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 60483 0.72 0.416172
Target:  5'- -cGGCUCGGC-C-GGCUCCAGGCg-- -3'
miRNA:   3'- ccCCGAGCCGcGuUUGAGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 58180 0.72 0.440422
Target:  5'- cGGGGUcgucaaagccgccuUCGGCcaGCAGgcGCUCCGGGCg-- -3'
miRNA:   3'- -CCCCG--------------AGCCG--CGUU--UGAGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 18282 0.72 0.452381
Target:  5'- uGGGGCUgGGUGgAAACUCUucGGCg-- -3'
miRNA:   3'- -CCCCGAgCCGCgUUUGAGGu-CCGauu -5'
6479 3' -57.8 NC_001847.1 + 57771 0.71 0.471118
Target:  5'- cGGGGCUgcUGGUGCucg--CCGGGCUGGu -3'
miRNA:   3'- -CCCCGA--GCCGCGuuugaGGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 69695 0.71 0.471118
Target:  5'- cGGGGC-CGGCGCucGgUCCGcGGCg-- -3'
miRNA:   3'- -CCCCGaGCCGCGuuUgAGGU-CCGauu -5'
6479 3' -57.8 NC_001847.1 + 35878 0.71 0.480633
Target:  5'- uGGGC-CGGCGCAAauauACUCCcgcgccGGCUGc -3'
miRNA:   3'- cCCCGaGCCGCGUU----UGAGGu-----CCGAUu -5'
6479 3' -57.8 NC_001847.1 + 47794 0.71 0.480633
Target:  5'- -cGGcCUCGGCGCccgcgaucGGCUCCAGGUUGu -3'
miRNA:   3'- ccCC-GAGCCGCGu-------UUGAGGUCCGAUu -5'
6479 3' -57.8 NC_001847.1 + 46919 0.71 0.490241
Target:  5'- gGGGGCgcgUCgGGCcCGGGCUCCGGGCc-- -3'
miRNA:   3'- -CCCCG---AG-CCGcGUUUGAGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 33573 0.71 0.490241
Target:  5'- gGGGGCgucUGGCGC-GGC-CCGGGCUc- -3'
miRNA:   3'- -CCCCGa--GCCGCGuUUGaGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 53033 0.71 0.490241
Target:  5'- cGGGCggcaGGCGCAAACg-CAGGCg-- -3'
miRNA:   3'- cCCCGag--CCGCGUUUGagGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 86201 0.71 0.508736
Target:  5'- gGGGGCgguccagUCGcGCGCcuGCgcccgCCAGGCUAu -3'
miRNA:   3'- -CCCCG-------AGC-CGCGuuUGa----GGUCCGAUu -5'
6479 3' -57.8 NC_001847.1 + 60745 0.7 0.538511
Target:  5'- cGGGCgCGGCGCGguggcgguuuuccAGCUCCAGcGCc-- -3'
miRNA:   3'- cCCCGaGCCGCGU-------------UUGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 131115 0.7 0.539515
Target:  5'- cGGGGCgcgCGGCGCGGuaugcuGCUCgGGGg--- -3'
miRNA:   3'- -CCCCGa--GCCGCGUU------UGAGgUCCgauu -5'
6479 3' -57.8 NC_001847.1 + 56140 0.7 0.548571
Target:  5'- uGGGCUCGGCG-GGGCUCUaccgcacGGGCa-- -3'
miRNA:   3'- cCCCGAGCCGCgUUUGAGG-------UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 95825 0.7 0.549581
Target:  5'- -cGGCUCGGCgGCAGggGCaagCCAGGCa-- -3'
miRNA:   3'- ccCCGAGCCG-CGUU--UGa--GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 21873 0.7 0.549581
Target:  5'- gGGGGCUgCGGCGC--GCUgCCgAGGCc-- -3'
miRNA:   3'- -CCCCGA-GCCGCGuuUGA-GG-UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 23707 0.7 0.549581
Target:  5'- cGGGGCgcggUCGGCGCAGAggucgaUCAGGCg-- -3'
miRNA:   3'- -CCCCG----AGCCGCGUUUga----GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 32058 0.7 0.559704
Target:  5'- cGGGCUCGGCG---GCccCCGGGCUc- -3'
miRNA:   3'- cCCCGAGCCGCguuUGa-GGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 38503 0.7 0.559704
Target:  5'- cGGGGggCGGCGCGGucgCCGGcGCUGu -3'
miRNA:   3'- -CCCCgaGCCGCGUUugaGGUC-CGAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.