miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 24524 0.66 0.772378
Target:  5'- cGGGGCUCGcGCGCugcacgauUUCCgugcagAGGUUGGa -3'
miRNA:   3'- -CCCCGAGC-CGCGuuu-----GAGG------UCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 105049 0.66 0.770482
Target:  5'- cGGcGCUgGGCGCGGGCgugugguaguccCCGGGCg-- -3'
miRNA:   3'- cCC-CGAgCCGCGUUUGa-----------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 82440 0.66 0.800165
Target:  5'- -aGGuCggGGCGCuuGGCUCCAGGCg-- -3'
miRNA:   3'- ccCC-GagCCGCGu-UUGAGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 95512 0.66 0.800165
Target:  5'- uGGGCcUGGCGgGcGCgCCAGGCUu- -3'
miRNA:   3'- cCCCGaGCCGCgUuUGaGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 90834 0.66 0.789204
Target:  5'- cGGGGCgagaucagcgagCGGCGCcccgGGGC-CgGGGCUGGu -3'
miRNA:   3'- -CCCCGa-----------GCCGCG----UUUGaGgUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 82558 0.66 0.766675
Target:  5'- cGGGCUCGGCcucggccgccgccuCGAGCUCCAG-CUc- -3'
miRNA:   3'- cCCCGAGCCGc-------------GUUUGAGGUCcGAuu -5'
6479 3' -57.8 NC_001847.1 + 6165 0.66 0.772378
Target:  5'- aGGGa--GGCGCGgcaauuGugUCCAGGCUc- -3'
miRNA:   3'- cCCCgagCCGCGU------UugAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 39392 0.66 0.800165
Target:  5'- cGGGGagcCGGCGCcgg--CCGGGCUc- -3'
miRNA:   3'- -CCCCga-GCCGCGuuugaGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 39626 0.66 0.800165
Target:  5'- aGGGGCaagccUGGCGCGcccgCCAGGCc-- -3'
miRNA:   3'- -CCCCGa----GCCGCGUuugaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 69142 0.66 0.800165
Target:  5'- -uGGCgCGGCGUccgcCUUCGGGCUGAa -3'
miRNA:   3'- ccCCGaGCCGCGuuu-GAGGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 99812 0.66 0.762848
Target:  5'- --cGCUCGGC---AGCUCCAGGCg-- -3'
miRNA:   3'- cccCGAGCCGcguUUGAGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 2236 0.66 0.770482
Target:  5'- cGGcGCUgGGCGCGGGCgugugguaguccCCGGGCg-- -3'
miRNA:   3'- cCC-CGAgCCGCGUUUGa-----------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 6071 0.66 0.772378
Target:  5'- aGGGa--GGCGCGgcaauuGugUCCAGGCUc- -3'
miRNA:   3'- cCCCgagCCGCGU------UugAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 96361 0.66 0.781781
Target:  5'- cGGGGC-CGGCGguGGCaauggCgGGGCc-- -3'
miRNA:   3'- -CCCCGaGCCGCguUUGa----GgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 27649 0.66 0.794712
Target:  5'- gGGGGCUCGGaggaagacccggcccUGCucGACgcggcgcgUCGGGCUGAg -3'
miRNA:   3'- -CCCCGAGCC---------------GCGu-UUGa-------GGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 86504 0.66 0.772378
Target:  5'- gGGGGCggCGGCGCcccGCcgCCGcGGCg-- -3'
miRNA:   3'- -CCCCGa-GCCGCGuu-UGa-GGU-CCGauu -5'
6479 3' -57.8 NC_001847.1 + 88248 0.66 0.781781
Target:  5'- -cGGCgCGGCGCgGGGCgCCGGGCg-- -3'
miRNA:   3'- ccCCGaGCCGCG-UUUGaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 26487 0.66 0.772378
Target:  5'- aGGGGCgggccUGGUGCAAgGCgggccugCCGGGCg-- -3'
miRNA:   3'- -CCCCGa----GCCGCGUU-UGa------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 105759 0.66 0.762848
Target:  5'- aGGGcCUCGcGCGCGgcAGCUCC-GGCc-- -3'
miRNA:   3'- cCCC-GAGC-CGCGU--UUGAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 130462 0.66 0.794712
Target:  5'- gGGGGCUCGGaggaagacccggcccUGCucGACgcggcgcgUCGGGCUGAg -3'
miRNA:   3'- -CCCCGAGCC---------------GCGu-UUGa-------GGUCCGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.