miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 120931 0.66 0.800165
Target:  5'- cGGGGCggGcGCGCGGGCgugguGGCUGAu -3'
miRNA:   3'- -CCCCGagC-CGCGUUUGaggu-CCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 119555 0.73 0.365327
Target:  5'- aGGGGCgcgCGGC-CAGACUCUgcGGGCa-- -3'
miRNA:   3'- -CCCCGa--GCCGcGUUUGAGG--UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 119523 0.69 0.590356
Target:  5'- aGGGGCggCGGcCGCGGcCggCAGGCUGGg -3'
miRNA:   3'- -CCCCGa-GCC-GCGUUuGagGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 119230 0.67 0.703515
Target:  5'- cGGGGCggCGGgGCAGGCaUgGGGCc-- -3'
miRNA:   3'- -CCCCGa-GCCgCGUUUGaGgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 119110 0.67 0.703515
Target:  5'- cGGGGCggCGGgGCAGGCaUgGGGCc-- -3'
miRNA:   3'- -CCCCGa-GCCgCGUUUGaGgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 118881 0.68 0.672891
Target:  5'- cGGGcGCUCGGUGCAcggGGC-CgGGGCc-- -3'
miRNA:   3'- -CCC-CGAGCCGCGU---UUGaGgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 108978 0.66 0.772378
Target:  5'- aGGGa--GGCGCGgcaauuGugUCCAGGCUc- -3'
miRNA:   3'- cCCCgagCCGCGU------UugAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 108884 0.66 0.772378
Target:  5'- aGGGa--GGCGCGgcaauuGugUCCAGGCUc- -3'
miRNA:   3'- cCCCgagCCGCGU------UugAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 107429 0.68 0.662603
Target:  5'- cGGccaGCUCGGCGCGGGCggcccgCCGGcGCUc- -3'
miRNA:   3'- -CCc--CGAGCCGCGUUUGa-----GGUC-CGAuu -5'
6479 3' -57.8 NC_001847.1 + 106769 0.69 0.631623
Target:  5'- gGGGGCgccgucucCGGCGCGAgggcgccggggGC-CCGGGCg-- -3'
miRNA:   3'- -CCCCGa-------GCCGCGUU-----------UGaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 106626 0.69 0.631623
Target:  5'- cGGGCggcggCGGCGC--GCUgCCGGGCc-- -3'
miRNA:   3'- cCCCGa----GCCGCGuuUGA-GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 105759 0.66 0.762848
Target:  5'- aGGGcCUCGcGCGCGgcAGCUCC-GGCc-- -3'
miRNA:   3'- cCCC-GAGC-CGCGU--UUGAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 105049 0.66 0.770482
Target:  5'- cGGcGCUgGGCGCGGGCgugugguaguccCCGGGCg-- -3'
miRNA:   3'- cCC-CGAgCCGCGUUUGa-----------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 104336 0.66 0.762848
Target:  5'- aGGcGGcCUCGGCGCGcGCgaaggcgcCCGGGCc-- -3'
miRNA:   3'- -CC-CC-GAGCCGCGUuUGa-------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 104234 0.68 0.65229
Target:  5'- cGGGCaccgCGGUGCGcgGGC-CCAGGCg-- -3'
miRNA:   3'- cCCCGa---GCCGCGU--UUGaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 103953 0.69 0.621286
Target:  5'- cGGcGGCgccUCGGCGCGcGGCUCC-GGCa-- -3'
miRNA:   3'- -CC-CCG---AGCCGCGU-UUGAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 103490 0.75 0.304487
Target:  5'- cGGGGC---GCGCGGGCUCCGGGCc-- -3'
miRNA:   3'- -CCCCGagcCGCGUUUGAGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 103117 0.66 0.7532
Target:  5'- gGGGGCUUccccGCGCGAGCg-CGGGCc-- -3'
miRNA:   3'- -CCCCGAGc---CGCGUUUGagGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 102869 0.73 0.363707
Target:  5'- gGGGGCggaaauuUCGGCGCGGcgggcccgggcccGCUCUGGGCUc- -3'
miRNA:   3'- -CCCCG-------AGCCGCGUU-------------UGAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 102684 0.69 0.631623
Target:  5'- gGGGGCggGGCGgGGGCagggcgCCGGGCg-- -3'
miRNA:   3'- -CCCCGagCCGCgUUUGa-----GGUCCGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.