miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 134908 0.68 0.662603
Target:  5'- cGGGCgUCGGgGCGcgaGGC-CCGGGCUc- -3'
miRNA:   3'- cCCCG-AGCCgCGU---UUGaGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 134871 0.7 0.559704
Target:  5'- cGGGCUCGGCG---GCccCCGGGCUc- -3'
miRNA:   3'- cCCCGAGCCGCguuUGa-GGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 134642 0.66 0.800165
Target:  5'- gGGGGCgggcCGGCaGCAGGCgcggaggCgCGGGCa-- -3'
miRNA:   3'- -CCCCGa---GCCG-CGUUUGa------G-GUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 134190 0.69 0.631623
Target:  5'- cGGGuGC-CGGCGCAGucguCcCCGGGCg-- -3'
miRNA:   3'- -CCC-CGaGCCGCGUUu---GaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 134172 0.67 0.693356
Target:  5'- cGGGC-CGGCGCAuaGACgCCcGGCg-- -3'
miRNA:   3'- cCCCGaGCCGCGU--UUGaGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 134043 0.68 0.65229
Target:  5'- aGGGGCacgCGGCGUcuccAGAgUCaCAGGCg-- -3'
miRNA:   3'- -CCCCGa--GCCGCG----UUUgAG-GUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 133888 0.73 0.398745
Target:  5'- gGGGGCUCGGCGCGccGCUgC-GGCc-- -3'
miRNA:   3'- -CCCCGAGCCGCGUu-UGAgGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 133825 0.68 0.683145
Target:  5'- uGGGGCUCGGgGagcCGGACUUCguggaGGGCg-- -3'
miRNA:   3'- -CCCCGAGCCgC---GUUUGAGG-----UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 132383 0.69 0.590356
Target:  5'- gGGGGCgcCGGCGCcGGCgccgccgcgCCGGGCc-- -3'
miRNA:   3'- -CCCCGa-GCCGCGuUUGa--------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 131115 0.7 0.539515
Target:  5'- cGGGGCgcgCGGCGCGGuaugcuGCUCgGGGg--- -3'
miRNA:   3'- -CCCCGa--GCCGCGUU------UGAGgUCCgauu -5'
6479 3' -57.8 NC_001847.1 + 130908 0.67 0.733586
Target:  5'- gGGGGCggCGGUGCc--CUCgGGGCc-- -3'
miRNA:   3'- -CCCCGa-GCCGCGuuuGAGgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 130462 0.66 0.794712
Target:  5'- gGGGGCUCGGaggaagacccggcccUGCucGACgcggcgcgUCGGGCUGAg -3'
miRNA:   3'- -CCCCGAGCC---------------GCGu-UUGa-------GGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 129300 0.66 0.772378
Target:  5'- aGGGGCgggccUGGUGCAAgGCgggccugCCGGGCg-- -3'
miRNA:   3'- -CCCCGa----GCCGCGUU-UGa------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 127182 0.69 0.604767
Target:  5'- aGGGCccuaaaaacccgcaUGGCGCGAACUCCGGcGCg-- -3'
miRNA:   3'- cCCCGa-------------GCCGCGUUUGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 126539 0.67 0.733586
Target:  5'- cGGGGCUUGcGCuGCGGcugacGCUCgCGcGGCUAAc -3'
miRNA:   3'- -CCCCGAGC-CG-CGUU-----UGAG-GU-CCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 125519 0.66 0.800165
Target:  5'- cGGGC-CGGCGCG-GCggCGGGCg-- -3'
miRNA:   3'- cCCCGaGCCGCGUuUGagGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 124591 0.67 0.703515
Target:  5'- cGGGCcCGGCGCcgg--CCGGGCg-- -3'
miRNA:   3'- cCCCGaGCCGCGuuugaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 124444 0.67 0.723639
Target:  5'- -uGGC-CGGCGCGGGCcgcgcCCGGGCg-- -3'
miRNA:   3'- ccCCGaGCCGCGUUUGa----GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 123561 0.69 0.580099
Target:  5'- cGGGGCUUGGgccggggccgcCGCGAGCggggccggaCCGGGCUu- -3'
miRNA:   3'- -CCCCGAGCC-----------GCGUUUGa--------GGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 123482 0.69 0.580099
Target:  5'- cGGGCUCGGCuggggccgccGCAAGCggggCCGGGg--- -3'
miRNA:   3'- cCCCGAGCCG----------CGUUUGa---GGUCCgauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.