miRNA display CGI


Results 1 - 20 of 172 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 56 0.73 0.363707
Target:  5'- gGGGGCggaaauuUCGGCGCGGcgggcccgggcccGCUCUGGGCUc- -3'
miRNA:   3'- -CCCCG-------AGCCGCGUU-------------UGAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 1140 0.69 0.621286
Target:  5'- cGGcGGCgccUCGGCGCGcGGCUCC-GGCa-- -3'
miRNA:   3'- -CC-CCG---AGCCGCGU-UUGAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 1421 0.68 0.65229
Target:  5'- cGGGCaccgCGGUGCGcgGGC-CCAGGCg-- -3'
miRNA:   3'- cCCCGa---GCCGCGU--UUGaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 1523 0.66 0.762848
Target:  5'- aGGcGGcCUCGGCGCGcGCgaaggcgcCCGGGCc-- -3'
miRNA:   3'- -CC-CC-GAGCCGCGUuUGa-------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 1940 0.67 0.743442
Target:  5'- -cGGCgcgCGGCGCAGAgCUCCuccagcgaGGGCa-- -3'
miRNA:   3'- ccCCGa--GCCGCGUUU-GAGG--------UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 2236 0.66 0.770482
Target:  5'- cGGcGCUgGGCGCGGGCgugugguaguccCCGGGCg-- -3'
miRNA:   3'- cCC-CGAgCCGCGUUUGa-----------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 3426 0.66 0.762848
Target:  5'- gGGGGCgccaGGCGCA-GC-CCAGGg--- -3'
miRNA:   3'- -CCCCGag--CCGCGUuUGaGGUCCgauu -5'
6479 3' -57.8 NC_001847.1 + 3813 0.69 0.631623
Target:  5'- cGGGCggcggCGGCGC--GCUgCCGGGCc-- -3'
miRNA:   3'- cCCCGa----GCCGCGuuUGA-GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 3817 0.67 0.723639
Target:  5'- cGGGGCgUCGGcCGCGAGCgu--GGCg-- -3'
miRNA:   3'- -CCCCG-AGCC-GCGUUUGagguCCGauu -5'
6479 3' -57.8 NC_001847.1 + 4616 0.68 0.662603
Target:  5'- cGGccaGCUCGGCGCGGGCggcccgCCGGcGCUc- -3'
miRNA:   3'- -CCc--CGAGCCGCGUUUGa-----GGUC-CGAuu -5'
6479 3' -57.8 NC_001847.1 + 6071 0.66 0.772378
Target:  5'- aGGGa--GGCGCGgcaauuGugUCCAGGCUc- -3'
miRNA:   3'- cCCCgagCCGCGU------UugAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 6147 0.67 0.693356
Target:  5'- gGGGGCUCgguGGCGguGACggcgCgCAGGUg-- -3'
miRNA:   3'- -CCCCGAG---CCGCguUUGa---G-GUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 6165 0.66 0.772378
Target:  5'- aGGGa--GGCGCGgcaauuGugUCCAGGCUc- -3'
miRNA:   3'- cCCCgagCCGCGU------UugAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 6439 0.69 0.610957
Target:  5'- aGGGGUuaggCGGCGCGGcgacggcguACguggCCAGGCa-- -3'
miRNA:   3'- -CCCCGa---GCCGCGUU---------UGa---GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 8136 0.68 0.662603
Target:  5'- aGGGGCgggCGGUGCugcGCga-GGGCUAGu -3'
miRNA:   3'- -CCCCGa--GCCGCGuu-UGaggUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 10002 0.67 0.703515
Target:  5'- cGGcGGCaauucgcauccUCGuGUGCGAggGCUCCGGGCUu- -3'
miRNA:   3'- -CC-CCG-----------AGC-CGCGUU--UGAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 10869 0.67 0.733586
Target:  5'- -cGGCg-GGCGCGGGCgcCCAGGCa-- -3'
miRNA:   3'- ccCCGagCCGCGUUUGa-GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 11990 0.7 0.559704
Target:  5'- gGGGGCUC-GCGCAAAC-CCGcuaguuGGCUc- -3'
miRNA:   3'- -CCCCGAGcCGCGUUUGaGGU------CCGAuu -5'
6479 3' -57.8 NC_001847.1 + 14452 0.69 0.580099
Target:  5'- cGGGGUgcgCGGcCGCGGccucuggguCUCCGGGCUc- -3'
miRNA:   3'- -CCCCGa--GCC-GCGUUu--------GAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 15020 0.66 0.781781
Target:  5'- uGGGGC-C-GCGCGAGCcgcggccgCCGGGCg-- -3'
miRNA:   3'- -CCCCGaGcCGCGUUUGa-------GGUCCGauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.