miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 77462 0.69 0.590356
Target:  5'- cGGGCUgGG-GCGGGCgCCGGGCg-- -3'
miRNA:   3'- cCCCGAgCCgCGUUUGaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 57771 0.71 0.471118
Target:  5'- cGGGGCUgcUGGUGCucg--CCGGGCUGGu -3'
miRNA:   3'- -CCCCGA--GCCGCGuuugaGGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 47794 0.71 0.480633
Target:  5'- -cGGcCUCGGCGCccgcgaucGGCUCCAGGUUGu -3'
miRNA:   3'- ccCC-GAGCCGCGu-------UUGAGGUCCGAUu -5'
6479 3' -57.8 NC_001847.1 + 60745 0.7 0.538511
Target:  5'- cGGGCgCGGCGCGguggcgguuuuccAGCUCCAGcGCc-- -3'
miRNA:   3'- cCCCGaGCCGCGU-------------UUGAGGUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 56140 0.7 0.548571
Target:  5'- uGGGCUCGGCG-GGGCUCUaccgcacGGGCa-- -3'
miRNA:   3'- cCCCGAGCCGCgUUUGAGG-------UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 21873 0.7 0.549581
Target:  5'- gGGGGCUgCGGCGC--GCUgCCgAGGCc-- -3'
miRNA:   3'- -CCCCGA-GCCGCGuuUGA-GG-UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 23707 0.7 0.549581
Target:  5'- cGGGGCgcggUCGGCGCAGAggucgaUCAGGCg-- -3'
miRNA:   3'- -CCCCG----AGCCGCGUUUga----GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 134871 0.7 0.559704
Target:  5'- cGGGCUCGGCG---GCccCCGGGCUc- -3'
miRNA:   3'- cCCCGAGCCGCguuUGa-GGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 81051 0.69 0.580099
Target:  5'- gGGGGCgacgugGGCGUggGCggggCCuGGCUGGa -3'
miRNA:   3'- -CCCCGag----CCGCGuuUGa---GGuCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 58263 0.72 0.416172
Target:  5'- aGGGUUCGGCGCc-AC-CCGGGCa-- -3'
miRNA:   3'- cCCCGAGCCGCGuuUGaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 33681 0.72 0.416172
Target:  5'- cGGGGCUagaGGCGCAGgcGCUCgCGGcGCg-- -3'
miRNA:   3'- -CCCCGAg--CCGCGUU--UGAG-GUC-CGauu -5'
6479 3' -57.8 NC_001847.1 + 50064 0.73 0.4074
Target:  5'- cGGGuccGCgcgCGGCGCGGAC-CCGGGCg-- -3'
miRNA:   3'- -CCC---CGa--GCCGCGUUUGaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 81224 0.74 0.341563
Target:  5'- -aGGCUCGGCgGCAGcggcgGCgggCCAGGCUGGg -3'
miRNA:   3'- ccCCGAGCCG-CGUU-----UGa--GGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 68472 0.74 0.341563
Target:  5'- cGGGGCcccgccgcgCgGGCGCAAGCgcgCCAGGCa-- -3'
miRNA:   3'- -CCCCGa--------G-CCGCGUUUGa--GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 16918 0.74 0.35728
Target:  5'- cGGGccGCUCGGCGCAGACgCCGGuCUGc -3'
miRNA:   3'- -CCC--CGAGCCGCGUUUGaGGUCcGAUu -5'
6479 3' -57.8 NC_001847.1 + 102869 0.73 0.363707
Target:  5'- gGGGGCggaaauuUCGGCGCGGcgggcccgggcccGCUCUGGGCUc- -3'
miRNA:   3'- -CCCCG-------AGCCGCGUU-------------UGAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 59565 0.73 0.365327
Target:  5'- gGGGGCggugcCGGCGgAAGCUCU-GGCUGg -3'
miRNA:   3'- -CCCCGa----GCCGCgUUUGAGGuCCGAUu -5'
6479 3' -57.8 NC_001847.1 + 41822 0.73 0.381792
Target:  5'- cGGGCgggCGGCGCGggUcCCAgGGCUGGg -3'
miRNA:   3'- cCCCGa--GCCGCGUuuGaGGU-CCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 133888 0.73 0.398745
Target:  5'- gGGGGCUCGGCGCGccGCUgC-GGCc-- -3'
miRNA:   3'- -CCCCGAGCCGCGUu-UGAgGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 15520 0.73 0.4074
Target:  5'- -cGGCUCGGCGgGAGC-CgCGGGCUGc -3'
miRNA:   3'- ccCCGAGCCGCgUUUGaG-GUCCGAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.