miRNA display CGI


Results 41 - 60 of 902 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6480 5' -70.3 NC_001847.1 + 19409 0.66 0.328909
Target:  5'- uGCCCaugGCC-ACCaGcGCgCCCGUGGCGg -3'
miRNA:   3'- -CGGGg--CGGcUGGgC-CGgGGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 74258 0.66 0.328909
Target:  5'- uGCCgCCGCUG-CUgGGgCCCgCGCGcGCGc -3'
miRNA:   3'- -CGG-GGCGGCuGGgCCgGGG-GCGC-CGC- -5'
6480 5' -70.3 NC_001847.1 + 106696 0.66 0.328909
Target:  5'- cGgCCCGUCG-CgCGGCg-CCGCGGCGu -3'
miRNA:   3'- -CgGGGCGGCuGgGCCGggGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 55441 0.66 0.328909
Target:  5'- gGUCCUGCagcGCCUGGCgCCgGCGGgGc -3'
miRNA:   3'- -CGGGGCGgc-UGGGCCGgGGgCGCCgC- -5'
6480 5' -70.3 NC_001847.1 + 31136 0.66 0.328909
Target:  5'- gGCgCCCGaCGAgcugCCGGCCgCgGCGGUGg -3'
miRNA:   3'- -CG-GGGCgGCUg---GGCCGGgGgCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 60965 0.66 0.328909
Target:  5'- gGCgCCGCgCGGCaUgGGCCCCaCGCcgagaGGCGc -3'
miRNA:   3'- -CGgGGCG-GCUG-GgCCGGGG-GCG-----CCGC- -5'
6480 5' -70.3 NC_001847.1 + 69191 0.66 0.328909
Target:  5'- cGUCCCGCgCGagcuccagcGCCUgGGCgUCCGCGGgGa -3'
miRNA:   3'- -CGGGGCG-GC---------UGGG-CCGgGGGCGCCgC- -5'
6480 5' -70.3 NC_001847.1 + 43204 0.66 0.328233
Target:  5'- cGCCUCGUgGauuGCUCGGCgccguugCCCgGUGGCGg -3'
miRNA:   3'- -CGGGGCGgC---UGGGCCG-------GGGgCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 85093 0.66 0.328233
Target:  5'- cGCCagcaggCCGCCGGCCagguugaucaucaCGGCgCgCCCGgGGCc -3'
miRNA:   3'- -CGG------GGCGGCUGG-------------GCCG-G-GGGCgCCGc -5'
6480 5' -70.3 NC_001847.1 + 97529 0.66 0.326886
Target:  5'- uCCCCGUcgggcaaaagagcgCGGgCCGGCCCCCgGCcGCc -3'
miRNA:   3'- cGGGGCG--------------GCUgGGCCGGGGG-CGcCGc -5'
6480 5' -70.3 NC_001847.1 + 67939 0.66 0.326214
Target:  5'- cGCgCCCGCCG-CUCGGCacggcgugugcuaCCUGCGcGCc -3'
miRNA:   3'- -CG-GGGCGGCuGGGCCGg------------GGGCGC-CGc -5'
6480 5' -70.3 NC_001847.1 + 64078 0.66 0.324872
Target:  5'- cGCCUCGCCG-CCCucgaGGUgUucgugcuggacguguCCGCGGCGc -3'
miRNA:   3'- -CGGGGCGGCuGGG----CCGgG---------------GGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 67137 0.66 0.324872
Target:  5'- aUCCCGCgGaccuacaaugccuggGCCaugacaGGCCCCCcgcucucgGCGGCGa -3'
miRNA:   3'- cGGGGCGgC---------------UGGg-----CCGGGGG--------CGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 2573 0.66 0.322202
Target:  5'- gGCgCgggCGCCuGCgCGGCCgCCGCGGCc -3'
miRNA:   3'- -CGgG---GCGGcUGgGCCGGgGGCGCCGc -5'
6480 5' -70.3 NC_001847.1 + 31976 0.66 0.322202
Target:  5'- gGCCCCGUgGACgCC-GCCCUCGagccGCGa -3'
miRNA:   3'- -CGGGGCGgCUG-GGcCGGGGGCgc--CGC- -5'
6480 5' -70.3 NC_001847.1 + 12301 0.66 0.322202
Target:  5'- uGCCCCGCaaGACUacuugaCGGCCCaCCuGCGcGCc -3'
miRNA:   3'- -CGGGGCGg-CUGG------GCCGGG-GG-CGC-CGc -5'
6480 5' -70.3 NC_001847.1 + 30313 0.66 0.322202
Target:  5'- --gCUGCgGACgCCcGCCCCCccgGCGGCGg -3'
miRNA:   3'- cggGGCGgCUG-GGcCGGGGG---CGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 109406 0.66 0.322202
Target:  5'- gGCCCUGCCucccuacuuuuGCCUgugugaagGGCCCagCCGCGGUGc -3'
miRNA:   3'- -CGGGGCGGc----------UGGG--------CCGGG--GGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 30598 0.66 0.322202
Target:  5'- cGCCgCGUagCGGCCCcggGGCCgCCGCGcaGCGc -3'
miRNA:   3'- -CGGgGCG--GCUGGG---CCGGgGGCGC--CGC- -5'
6480 5' -70.3 NC_001847.1 + 43378 0.66 0.322202
Target:  5'- aGCgCCGCCGACggaGCgCCCGCGGa- -3'
miRNA:   3'- -CGgGGCGGCUGggcCGgGGGCGCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.