miRNA display CGI

Results 81 - 100 of 969 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6481	5'	-64.2	NC_001847.1	+	18815	0.66	0.549607
	Target:  5'- gCCAGCGcgcgcauGGGcacGGCGUccucgCGCgCGCCGCa -3' miRNA:   3'- gGGUCGU-------CCUa--CCGCG-----GCGgGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	31011	0.66	0.541082
	Target:  5'- gUCCGGCGuuGccGGCGCgCGCgCGCCGg -3' miRNA:   3'- -GGGUCGUc-CuaCCGCG-GCGgGCGGCg -5'
6481	5'	-64.2	NC_001847.1	+	49248	0.66	0.550556
	Target:  5'- aCgCGGCucgccuGGAccucgacaagcUcGCGCUGCUCGCCGCg -3' miRNA:   3'- -GgGUCGu-----CCU-----------AcCGCGGCGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	44643	0.66	0.531663
	Target:  5'- uCUgGGCAucGGA-GGCuGCUGcCCCGCCuGCa -3' miRNA:   3'- -GGgUCGU--CCUaCCG-CGGC-GGGCGG-CG- -5'
6481	5'	-64.2	NC_001847.1	+	53362	0.66	0.547708
	Target:  5'- aCCAgguccgcgucauacGCGGGcagGGCuaGCUGCCggCGCCGCa -3' miRNA:   3'- gGGU--------------CGUCCua-CCG--CGGCGG--GCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	48931	0.66	0.522303
	Target:  5'- gCCUGGCGGGcgcaGGCGCgcgacuggacCGCCCccgguGCCGUc -3' miRNA:   3'- -GGGUCGUCCua--CCGCG----------GCGGG-----CGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	9521	0.66	0.516718
	Target:  5'- gCCgAGCGGGcgGcGCGCuagcguccgugcgugCGCCagCGCUGCa -3' miRNA:   3'- -GGgUCGUCCuaC-CGCG---------------GCGG--GCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	10420	0.66	0.550556
	Target:  5'- cCCCGcGCGGuucGcGCuGCCGCCC-CCGCg -3' miRNA:   3'- -GGGU-CGUCcuaC-CG-CGGCGGGcGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	112712	0.66	0.550556
	Target:  5'- gCCCGaccGCGuGGucucgGGCcCCGCCC-CCGCg -3' miRNA:   3'- -GGGU---CGU-CCua---CCGcGGCGGGcGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	54523	0.66	0.550556
	Target:  5'- -gCGGUGGGgcGGgGCCGUCCGggggCGCa -3' miRNA:   3'- ggGUCGUCCuaCCgCGGCGGGCg---GCG- -5'
6481	5'	-64.2	NC_001847.1	+	27494	0.66	0.541082
	Target:  5'- uUCGGCGGcaGA-GGCcucgGCCG-CCGCCGCg -3' miRNA:   3'- gGGUCGUC--CUaCCG----CGGCgGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	74425	0.66	0.541082
	Target:  5'- gCCCGucguGgAGGucGUGGCGgCGCacgaCGCCGUg -3' miRNA:   3'- -GGGU----CgUCC--UACCGCgGCGg---GCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	9899	0.66	0.550556
	Target:  5'- gCCCGaccGCGuGGucucgGGCcCCGCCC-CCGCg -3' miRNA:   3'- -GGGU---CGU-CCua---CCGcGGCGGGcGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	33789	0.66	0.494629
	Target:  5'- gCUUcGCGGGGcUGcGCGCggCGCCCGgCGCg -3' miRNA:   3'- -GGGuCGUCCU-AC-CGCG--GCGGGCgGCG- -5'
6481	5'	-64.2	NC_001847.1	+	130666	0.66	0.531663
	Target:  5'- gCCGGCGccagggacgcGGggGGCGCCGaggacgcggaCGUCGCg -3' miRNA:   3'- gGGUCGU----------CCuaCCGCGGCgg--------GCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	134143	0.66	0.531663
	Target:  5'- gCCuGguGGAgcgcgUGcCGCCGCCgGCgGCg -3' miRNA:   3'- gGGuCguCCU-----ACcGCGGCGGgCGgCG- -5'
6481	5'	-64.2	NC_001847.1	+	86413	0.66	0.550556
	Target:  5'- gCgCAGCucguGGAUuuguuggcGGCGCUGCgCGgCGCg -3' miRNA:   3'- -GgGUCGu---CCUA--------CCGCGGCGgGCgGCG- -5'
6481	5'	-64.2	NC_001847.1	+	115299	0.66	0.507464
	Target:  5'- cCCCGggcGCGGGccaagGGCGCUGugucgacaaaagccaCcCCGCCGCu -3' miRNA:   3'- -GGGU---CGUCCua---CCGCGGC---------------G-GGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	115608	0.66	0.550556
	Target:  5'- -gCGGCuuGGAguccGGCuGCCGUuuCUGCCGCa -3' miRNA:   3'- ggGUCGu-CCUa---CCG-CGGCG--GGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	66504	0.66	0.522303
	Target:  5'- gCCAGCGGcgcGGUGgaggcGCGCCGCCUuGCgGUc -3' miRNA:   3'- gGGUCGUC---CUAC-----CGCGGCGGG-CGgCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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