miRNA display CGI


Results 61 - 80 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 29560 0.66 0.541082
Target:  5'- cCCCcGCAcGGAcgccGUGCCGgCUGCCGUc -3'
miRNA:   3'- -GGGuCGU-CCUac--CGCGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 27494 0.66 0.541082
Target:  5'- uUCGGCGGcaGA-GGCcucgGCCG-CCGCCGCg -3'
miRNA:   3'- gGGUCGUC--CUaCCG----CGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 48931 0.66 0.522303
Target:  5'- gCCUGGCGGGcgcaGGCGCgcgacuggacCGCCCccgguGCCGUc -3'
miRNA:   3'- -GGGUCGUCCua--CCGCG----------GCGGG-----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 44643 0.66 0.531663
Target:  5'- uCUgGGCAucGGA-GGCuGCUGcCCCGCCuGCa -3'
miRNA:   3'- -GGgUCGU--CCUaCCG-CGGC-GGGCGG-CG- -5'
6481 5' -64.2 NC_001847.1 + 107700 0.66 0.494629
Target:  5'- -gCGGCAGGGcccccGCGCCGCugcgaacgacaCCGaCCGCg -3'
miRNA:   3'- ggGUCGUCCUac---CGCGGCG-----------GGC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 33789 0.66 0.494629
Target:  5'- gCUUcGCGGGGcUGcGCGCggCGCCCGgCGCg -3'
miRNA:   3'- -GGGuCGUCCU-AC-CGCG--GCGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 86413 0.66 0.550556
Target:  5'- gCgCAGCucguGGAUuuguuggcGGCGCUGCgCGgCGCg -3'
miRNA:   3'- -GgGUCGu---CCUA--------CCGCGGCGgGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 48738 0.66 0.526039
Target:  5'- --aGGCGGcGGUGcaguaugacucagccGCG-CGCCCGCCGCc -3'
miRNA:   3'- gggUCGUC-CUAC---------------CGCgGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 79382 0.66 0.541082
Target:  5'- -gCGGCAGc---GCGCgGCUCGCCGUg -3'
miRNA:   3'- ggGUCGUCcuacCGCGgCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132119 0.66 0.494629
Target:  5'- gCCgAGCuGcucGGCGCgGCCCGCgaCGCg -3'
miRNA:   3'- -GGgUCGuCcuaCCGCGgCGGGCG--GCG- -5'
6481 5' -64.2 NC_001847.1 + 119522 0.66 0.494629
Target:  5'- gCCA-CGGG--GGCGUCGuUCCGCCGUa -3'
miRNA:   3'- gGGUcGUCCuaCCGCGGC-GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 29499 0.66 0.494629
Target:  5'- cUCCGGCcgcGGgcGGCGCUucggccgcagaGCUCGcCCGCg -3'
miRNA:   3'- -GGGUCGu--CCuaCCGCGG-----------CGGGC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 113021 0.66 0.503782
Target:  5'- gCCGcCGGGcccagGGCG-CGCCCGCUGUc -3'
miRNA:   3'- gGGUcGUCCua---CCGCgGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 56054 0.66 0.503782
Target:  5'- cCCCu--GGGA-GGCGCCGCUgaaGCCuGCg -3'
miRNA:   3'- -GGGucgUCCUaCCGCGGCGGg--CGG-CG- -5'
6481 5' -64.2 NC_001847.1 + 106307 0.66 0.494629
Target:  5'- aCCGGCGGcagcGGCGCCGUCaCGCUc- -3'
miRNA:   3'- gGGUCGUCcua-CCGCGGCGG-GCGGcg -5'
6481 5' -64.2 NC_001847.1 + 59724 0.66 0.513008
Target:  5'- gCCuGCAGGuacguGUGGCccGCgaUGCCCGCCucGCg -3'
miRNA:   3'- gGGuCGUCC-----UACCG--CG--GCGGGCGG--CG- -5'
6481 5' -64.2 NC_001847.1 + 74297 0.66 0.531663
Target:  5'- cCUCGGCGGGcgcggagcugcuGUuucccaugacGGUGCCG-CUGCCGCa -3'
miRNA:   3'- -GGGUCGUCC------------UA----------CCGCGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 134143 0.66 0.531663
Target:  5'- gCCuGguGGAgcgcgUGcCGCCGCCgGCgGCg -3'
miRNA:   3'- gGGuCguCCU-----ACcGCGGCGGgCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 118669 0.66 0.503782
Target:  5'- aCCCAgGCAGGGcgGGgGUUggGCCgGgCCGCa -3'
miRNA:   3'- -GGGU-CGUCCUa-CCgCGG--CGGgC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 105726 0.66 0.550556
Target:  5'- gCgAGCGGGGccacgguccGCGCCGCCagcgcgGCCGCn -3'
miRNA:   3'- gGgUCGUCCUac-------CGCGGCGGg-----CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.