miRNA display CGI

Results 41 - 60 of 969 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6481	5'	-64.2	NC_001847.1	+	63735	0.66	0.522303
	Target:  5'- cCCCGGCc-GAgcaacaGCGCCGCCUgGCgGCg -3' miRNA:   3'- -GGGUCGucCUac----CGCGGCGGG-CGgCG- -5'
6481	5'	-64.2	NC_001847.1	+	130666	0.66	0.531663
	Target:  5'- gCCGGCGccagggacgcGGggGGCGCCGaggacgcggaCGUCGCg -3' miRNA:   3'- gGGUCGU----------CCuaCCGCGGCgg--------GCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	78233	0.66	0.522303
	Target:  5'- cCCgGGCGGGuucgcccUGGagGCCGacgUCGCCGCg -3' miRNA:   3'- -GGgUCGUCCu------ACCg-CGGCg--GGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	48931	0.66	0.522303
	Target:  5'- gCCUGGCGGGcgcaGGCGCgcgacuggacCGCCCccgguGCCGUc -3' miRNA:   3'- -GGGUCGUCCua--CCGCG----------GCGGG-----CGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	37552	0.66	0.526039
	Target:  5'- aCgGGCGGcccuucggaagacgcGgcGGCGCUGgCCGCUGCg -3' miRNA:   3'- gGgUCGUC---------------CuaCCGCGGCgGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	107114	0.66	0.493717
	Target:  5'- cCUCGGCuucGAUGGCggcggcuaugacgGCCGCUUcgGCCGCg -3' miRNA:   3'- -GGGUCGuc-CUACCG-------------CGGCGGG--CGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	43003	0.66	0.513008
	Target:  5'- gCCGcCGGGggGGCG-CGCCgGgCCGCc -3' miRNA:   3'- gGGUcGUCCuaCCGCgGCGGgC-GGCG- -5'
6481	5'	-64.2	NC_001847.1	+	60148	0.66	0.494629
	Target:  5'- gCCGaagaacGCGGGGU-GCGCCacGCCCGCgaGCg -3' miRNA:   3'- gGGU------CGUCCUAcCGCGG--CGGGCGg-CG- -5'
6481	5'	-64.2	NC_001847.1	+	122179	0.66	0.512082
	Target:  5'- aCCAGCGaccgGGC-CCacccccgGCCCGCCGCc -3' miRNA:   3'- gGGUCGUccuaCCGcGG-------CGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	132119	0.66	0.494629
	Target:  5'- gCCgAGCuGcucGGCGCgGCCCGCgaCGCg -3' miRNA:   3'- -GGgUCGuCcuaCCGCGgCGGGCG--GCG- -5'
6481	5'	-64.2	NC_001847.1	+	43125	0.66	0.494629
	Target:  5'- gCCCGcagacggcGCGGGcccgcgGGCGCugCGCCCGCaguCGCu -3' miRNA:   3'- -GGGU--------CGUCCua----CCGCG--GCGGGCG---GCG- -5'
6481	5'	-64.2	NC_001847.1	+	59724	0.66	0.513008
	Target:  5'- gCCuGCAGGuacguGUGGCccGCgaUGCCCGCCucGCg -3' miRNA:   3'- gGGuCGUCC-----UACCG--CG--GCGGGCGG--CG- -5'
6481	5'	-64.2	NC_001847.1	+	81234	0.66	0.494629
	Target:  5'- -gCAGCGgcGGcgGGCcagGCUggGCCUGCCGCu -3' miRNA:   3'- ggGUCGU--CCuaCCG---CGG--CGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	73278	0.66	0.494629
	Target:  5'- cCCCcGCGGGcgcucggcaGGCGCgGCCuaCGCCGg -3' miRNA:   3'- -GGGuCGUCCua-------CCGCGgCGG--GCGGCg -5'
6481	5'	-64.2	NC_001847.1	+	17670	0.66	0.541082
	Target:  5'- aCCAGagcucCAGGcgcgcaccgccaGUGGCGUUgucgGCCaCGCCGCa -3' miRNA:   3'- gGGUC-----GUCC------------UACCGCGG----CGG-GCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	134143	0.66	0.531663
	Target:  5'- gCCuGguGGAgcgcgUGcCGCCGCCgGCgGCg -3' miRNA:   3'- gGGuCguCCU-----ACcGCGGCGGgCGgCG- -5'
6481	5'	-64.2	NC_001847.1	+	130124	0.66	0.507464
	Target:  5'- gCCCgAGCuuccccuccGCGCCGCcgCCGCCGCg -3' miRNA:   3'- -GGG-UCGuccuac---CGCGGCG--GGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	119522	0.66	0.494629
	Target:  5'- gCCA-CGGG--GGCGUCGuUCCGCCGUa -3' miRNA:   3'- gGGUcGUCCuaCCGCGGC-GGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	44643	0.66	0.531663
	Target:  5'- uCUgGGCAucGGA-GGCuGCUGcCCCGCCuGCa -3' miRNA:   3'- -GGgUCGU--CCUaCCG-CGGC-GGGCGG-CG- -5'
6481	5'	-64.2	NC_001847.1	+	50444	0.66	0.530724
	Target:  5'- aCCCGcGCugcgacaAGGAcGGCaaGCCG-CUGCCGCa -3' miRNA:   3'- -GGGU-CG-------UCCUaCCG--CGGCgGGCGGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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