miRNA display CGI

Results 41 - 60 of 969 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6481	5'	-64.2	NC_001847.1	+	43125	0.66	0.494629
	Target:  5'- gCCCGcagacggcGCGGGcccgcgGGCGCugCGCCCGCaguCGCu -3' miRNA:   3'- -GGGU--------CGUCCua----CCGCG--GCGGGCG---GCG- -5'
6481	5'	-64.2	NC_001847.1	+	118264	0.66	0.513935
	Target:  5'- aCgCAGCGGuGGUGGUGaugucucuccaggaGCCCGCuCGCc -3' miRNA:   3'- -GgGUCGUC-CUACCGCgg------------CGGGCG-GCG- -5'
6481	5'	-64.2	NC_001847.1	+	24211	0.66	0.526039
	Target:  5'- -aCGGcCAGGAgcaGGCGCUcgGCgaucuccacguucagCCGCCGCg -3' miRNA:   3'- ggGUC-GUCCUa--CCGCGG--CG---------------GGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	72617	0.66	0.503782
	Target:  5'- gCC-GCAcGGcacGUGCCGCCCguGCCGCa -3' miRNA:   3'- gGGuCGU-CCuacCGCGGCGGG--CGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	27494	0.66	0.541082
	Target:  5'- uUCGGCGGcaGA-GGCcucgGCCG-CCGCCGCg -3' miRNA:   3'- gGGUCGUC--CUaCCG----CGGCgGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	21338	0.66	0.540137
	Target:  5'- gCCAuuguggcGCAGacGAUGcGCGCCGUCgGCgGCu -3' miRNA:   3'- gGGU-------CGUC--CUAC-CGCGGCGGgCGgCG- -5'
6481	5'	-64.2	NC_001847.1	+	132119	0.66	0.494629
	Target:  5'- gCCgAGCuGcucGGCGCgGCCCGCgaCGCg -3' miRNA:   3'- -GGgUCGuCcuaCCGCGgCGGGCG--GCG- -5'
6481	5'	-64.2	NC_001847.1	+	44643	0.66	0.531663
	Target:  5'- uCUgGGCAucGGA-GGCuGCUGcCCCGCCuGCa -3' miRNA:   3'- -GGgUCGU--CCUaCCG-CGGC-GGGCGG-CG- -5'
6481	5'	-64.2	NC_001847.1	+	9521	0.66	0.516718
	Target:  5'- gCCgAGCGGGcgGcGCGCuagcguccgugcgugCGCCagCGCUGCa -3' miRNA:   3'- -GGgUCGUCCuaC-CGCG---------------GCGG--GCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	130124	0.66	0.507464
	Target:  5'- gCCCgAGCuuccccuccGCGCCGCcgCCGCCGCg -3' miRNA:   3'- -GGG-UCGuccuac---CGCGGCG--GGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	31011	0.66	0.541082
	Target:  5'- gUCCGGCGuuGccGGCGCgCGCgCGCCGg -3' miRNA:   3'- -GGGUCGUc-CuaCCGCG-GCGgGCGGCg -5'
6481	5'	-64.2	NC_001847.1	+	74297	0.66	0.531663
	Target:  5'- cCUCGGCGGGcgcggagcugcuGUuucccaugacGGUGCCG-CUGCCGCa -3' miRNA:   3'- -GGGUCGUCC------------UA----------CCGCGGCgGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	63535	0.66	0.541082
	Target:  5'- gUCCGcGCugc-UGGCGCCGCCUggGCCGg -3' miRNA:   3'- -GGGU-CGuccuACCGCGGCGGG--CGGCg -5'
6481	5'	-64.2	NC_001847.1	+	107700	0.66	0.494629
	Target:  5'- -gCGGCAGGGcccccGCGCCGCugcgaacgacaCCGaCCGCg -3' miRNA:   3'- ggGUCGUCCUac---CGCGGCG-----------GGC-GGCG- -5'
6481	5'	-64.2	NC_001847.1	+	119522	0.66	0.494629
	Target:  5'- gCCA-CGGG--GGCGUCGuUCCGCCGUa -3' miRNA:   3'- gGGUcGUCCuaCCGCGGC-GGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	43003	0.66	0.513008
	Target:  5'- gCCGcCGGGggGGCG-CGCCgGgCCGCc -3' miRNA:   3'- gGGUcGUCCuaCCGCgGCGGgC-GGCG- -5'
6481	5'	-64.2	NC_001847.1	+	51965	0.66	0.501028
	Target:  5'- cCCgCGGCAGuGAUgcacugggugcgccGGCGCaucgcggacgCGCCCgacGCCGCg -3' miRNA:   3'- -GG-GUCGUC-CUA--------------CCGCG----------GCGGG---CGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	73278	0.66	0.494629
	Target:  5'- cCCCcGCGGGcgcucggcaGGCGCgGCCuaCGCCGg -3' miRNA:   3'- -GGGuCGUCCua-------CCGCGgCGG--GCGGCg -5'
6481	5'	-64.2	NC_001847.1	+	88598	0.66	0.494629
	Target:  5'- gCgCGGCuGGAggaccucgcGcGCGCCG-CCGCCGCc -3' miRNA:   3'- -GgGUCGuCCUa--------C-CGCGGCgGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	31156	0.66	0.503782
	Target:  5'- gCCUucGCGGGc-GGCGUCGa-CGCCGCg -3' miRNA:   3'- -GGGu-CGUCCuaCCGCGGCggGCGGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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