miRNA display CGI

Results 21 - 40 of 969 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6481	5'	-64.2	NC_001847.1	+	119522	0.66	0.494629
	Target:  5'- gCCA-CGGG--GGCGUCGuUCCGCCGUa -3' miRNA:   3'- gGGUcGUCCuaCCGCGGC-GGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	122179	0.66	0.512082
	Target:  5'- aCCAGCGaccgGGC-CCacccccgGCCCGCCGCc -3' miRNA:   3'- gGGUCGUccuaCCGcGG-------CGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	69312	0.66	0.510233
	Target:  5'- aCCGGCugccuuuugggcgcGGGccucgGGCGCUGCUgGCgGCg -3' miRNA:   3'- gGGUCG--------------UCCua---CCGCGGCGGgCGgCG- -5'
6481	5'	-64.2	NC_001847.1	+	14804	0.66	0.503782
	Target:  5'- aCCgCAGCGgcGGAgcUGcGCGgCGCCCuGCgCGCg -3' miRNA:   3'- -GG-GUCGU--CCU--AC-CGCgGCGGG-CG-GCG- -5'
6481	5'	-64.2	NC_001847.1	+	106307	0.66	0.494629
	Target:  5'- aCCGGCGGcagcGGCGCCGUCaCGCUc- -3' miRNA:   3'- gGGUCGUCcua-CCGCGGCGG-GCGGcg -5'
6481	5'	-64.2	NC_001847.1	+	134098	0.66	0.494629
	Target:  5'- gCCC-GCGGGAgacgcucGUGCUGCUgcggcgCGCCGCg -3' miRNA:   3'- -GGGuCGUCCUac-----CGCGGCGG------GCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	88598	0.66	0.494629
	Target:  5'- gCgCGGCuGGAggaccucgcGcGCGCCG-CCGCCGCc -3' miRNA:   3'- -GgGUCGuCCUa--------C-CGCGGCgGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	9521	0.66	0.516718
	Target:  5'- gCCgAGCGGGcgGcGCGCuagcguccgugcgugCGCCagCGCUGCa -3' miRNA:   3'- -GGgUCGUCCuaC-CGCG---------------GCGG--GCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	43125	0.66	0.494629
	Target:  5'- gCCCGcagacggcGCGGGcccgcgGGCGCugCGCCCGCaguCGCu -3' miRNA:   3'- -GGGU--------CGUCCua----CCGCG--GCGGGCG---GCG- -5'
6481	5'	-64.2	NC_001847.1	+	71893	0.66	0.522303
	Target:  5'- ---cGCGGuGAUGGCGCUGCa-GCgGCg -3' miRNA:   3'- ggguCGUC-CUACCGCGGCGggCGgCG- -5'
6481	5'	-64.2	NC_001847.1	+	113021	0.66	0.503782
	Target:  5'- gCCGcCGGGcccagGGCG-CGCCCGCUGUc -3' miRNA:   3'- gGGUcGUCCua---CCGCgGCGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	103974	0.66	0.522303
	Target:  5'- cUCCGGCAGc---GCgGCCGCgcagaaggccaCCGCCGCg -3' miRNA:   3'- -GGGUCGUCcuacCG-CGGCG-----------GGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	118669	0.66	0.503782
	Target:  5'- aCCCAgGCAGGGcgGGgGUUggGCCgGgCCGCa -3' miRNA:   3'- -GGGU-CGUCCUa-CCgCGG--CGGgC-GGCG- -5'
6481	5'	-64.2	NC_001847.1	+	66504	0.66	0.522303
	Target:  5'- gCCAGCGGcgcGGUGgaggcGCGCCGCCUuGCgGUc -3' miRNA:   3'- gGGUCGUC---CUAC-----CGCGGCGGG-CGgCG- -5'
6481	5'	-64.2	NC_001847.1	+	60148	0.66	0.494629
	Target:  5'- gCCGaagaacGCGGGGU-GCGCCacGCCCGCgaGCg -3' miRNA:   3'- gGGU------CGUCCUAcCGCGG--CGGGCGg-CG- -5'
6481	5'	-64.2	NC_001847.1	+	73278	0.66	0.494629
	Target:  5'- cCCCcGCGGGcgcucggcaGGCGCgGCCuaCGCCGg -3' miRNA:   3'- -GGGuCGUCCua-------CCGCGgCGG--GCGGCg -5'
6481	5'	-64.2	NC_001847.1	+	87844	0.66	0.521371
	Target:  5'- gCCGGCGGGcgugAUGGCccgcgggccugugGUCGCUgugGCCGCg -3' miRNA:   3'- gGGUCGUCC----UACCG-------------CGGCGGg--CGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	118264	0.66	0.513935
	Target:  5'- aCgCAGCGGuGGUGGUGaugucucuccaggaGCCCGCuCGCc -3' miRNA:   3'- -GgGUCGUC-CUACCGCgg------------CGGGCG-GCG- -5'
6481	5'	-64.2	NC_001847.1	+	107034	0.66	0.522303
	Target:  5'- gCCGGCcucGGuccUGGCcccgagggcaccGCCGCCCcCCGCc -3' miRNA:   3'- gGGUCGu--CCu--ACCG------------CGGCGGGcGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	78233	0.66	0.522303
	Target:  5'- cCCgGGCGGGuucgcccUGGagGCCGacgUCGCCGCg -3' miRNA:   3'- -GGgUCGUCCu------ACCg-CGGCg--GGCGGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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