miRNA display CGI


Results 21 - 40 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 2467 0.78 0.099217
Target:  5'- aUCgAGCGGGcggcGGCGCC-CCCGCCGCc -3'
miRNA:   3'- -GGgUCGUCCua--CCGCGGcGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 2537 0.69 0.360528
Target:  5'- aCCCGGC-----GGCGCU-CCCGCCGCc -3'
miRNA:   3'- -GGGUCGuccuaCCGCGGcGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 2555 0.74 0.175036
Target:  5'- cUCCGGCGGGcugucuucggcgcgGGCGCCuGCgcggCCGCCGCg -3'
miRNA:   3'- -GGGUCGUCCua------------CCGCGG-CG----GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 2631 0.68 0.432881
Target:  5'- uUCGGCGGGAccGCcgucGCCGCuuGCgGCg -3'
miRNA:   3'- gGGUCGUCCUacCG----CGGCGggCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 2753 0.74 0.183171
Target:  5'- gCCCGGCGcGgcGGCGCCGgcgccggcgccCCCGCCGg -3'
miRNA:   3'- -GGGUCGUcCuaCCGCGGC-----------GGGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 2862 0.69 0.36814
Target:  5'- gCCAGCGcccaGGCcgacgcgcggGCCGCCgCGCCGCg -3'
miRNA:   3'- gGGUCGUccuaCCG----------CGGCGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 2913 0.67 0.476554
Target:  5'- gCgAGCGGGGccacgguccGCGCCGCCagcgcgGCCGCc -3'
miRNA:   3'- gGgUCGUCCUac-------CGCGGCGGg-----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 2951 0.66 0.499196
Target:  5'- cUCCAGCGcGGcgGccgccucggcgcgcaGCGCCGCCggggccggcgcuggaGCCGCg -3'
miRNA:   3'- -GGGUCGU-CCuaC---------------CGCGGCGGg--------------CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 3104 0.78 0.087489
Target:  5'- gCCGGCAGGc---CGCgGCCCGCCGCg -3'
miRNA:   3'- gGGUCGUCCuaccGCGgCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 3144 0.69 0.36814
Target:  5'- gCCCGGCGGcgccGgcGGCGCgGCggGCCGCc -3'
miRNA:   3'- -GGGUCGUC----CuaCCGCGgCGggCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 3185 0.68 0.424428
Target:  5'- uCgCGGCAGGcgacGGCGCagcgGUCCGCCaGCu -3'
miRNA:   3'- -GgGUCGUCCua--CCGCGg---CGGGCGG-CG- -5'
6481 5' -64.2 NC_001847.1 + 3258 0.74 0.166421
Target:  5'- -gCGGCAGGGgcgccGGCGCCGCgCgGCCGg -3'
miRNA:   3'- ggGUCGUCCUa----CCGCGGCG-GgCGGCg -5'
6481 5' -64.2 NC_001847.1 + 3303 0.7 0.331189
Target:  5'- gCUCGGCGagcgcGGcgcgGGCGCCGCugCCGCCGg -3'
miRNA:   3'- -GGGUCGU-----CCua--CCGCGGCG--GGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 3332 0.68 0.39163
Target:  5'- gCCGcGCAgGGGUGcGUuaugccgacgcuGCCGgCCGCCGCa -3'
miRNA:   3'- gGGU-CGU-CCUAC-CG------------CGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 3347 0.71 0.284168
Target:  5'- uCCgGGUAGGccaugggGGCGUaCGCgCGCCGCa -3'
miRNA:   3'- -GGgUCGUCCua-----CCGCG-GCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 3494 0.66 0.494629
Target:  5'- aCCGGCGGcagcGGCGCCGUCaCGCUc- -3'
miRNA:   3'- gGGUCGUCcua-CCGCGGCGG-GCGGcg -5'
6481 5' -64.2 NC_001847.1 + 3674 0.7 0.331189
Target:  5'- gCCAGCAGGccGcCGCgaGCCUGCgCGCa -3'
miRNA:   3'- gGGUCGUCCuaCcGCGg-CGGGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 3691 0.67 0.484648
Target:  5'- cUCCGGCAcgaacacGGccgcgGGCcCCGCggCCGCCGCg -3'
miRNA:   3'- -GGGUCGU-------CCua---CCGcGGCG--GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 3764 0.71 0.277898
Target:  5'- uCCCAG-AGGcccucgcgGGUGUCGCCCgcGCCGCc -3'
miRNA:   3'- -GGGUCgUCCua------CCGCGGCGGG--CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 3781 0.68 0.399674
Target:  5'- cCCgGGCGGGAUgugcugcacgacGGCGUgccggcacggggCGUCgGCCGCg -3'
miRNA:   3'- -GGgUCGUCCUA------------CCGCG------------GCGGgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.