miRNA display CGI


Results 21 - 40 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 132972 0.66 0.494629
Target:  5'- gCCCAgGCGGcGcgGGCGCUGCgagaCCugguGCUGCg -3'
miRNA:   3'- -GGGU-CGUC-CuaCCGCGGCG----GG----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132921 0.69 0.338356
Target:  5'- gCCCAGCGccgcGGcgcUGGCgGCCuaCUGCCGCc -3'
miRNA:   3'- -GGGUCGU----CCu--ACCG-CGGcgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132855 0.69 0.353026
Target:  5'- gCCCGGCGGccccgccgccGAcGGCGgCuUCCGCCGCg -3'
miRNA:   3'- -GGGUCGUC----------CUaCCGCgGcGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132808 0.74 0.178848
Target:  5'- gCgCGGCGGGAgccGcCGCUGCCCGcCCGCg -3'
miRNA:   3'- -GgGUCGUCCUac-C-GCGGCGGGC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 132702 0.68 0.407823
Target:  5'- -aCGGCgAGGcggcGGCccuGCCGgCCGCCGCg -3'
miRNA:   3'- ggGUCG-UCCua--CCG---CGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132671 0.74 0.174617
Target:  5'- -aCGGCGGcGggGGCGCCGCCgC-CCGCu -3'
miRNA:   3'- ggGUCGUC-CuaCCGCGGCGG-GcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132606 0.68 0.432881
Target:  5'- gCCCGGCGGcGGgaGCGCCGCCgGguCCGa -3'
miRNA:   3'- -GGGUCGUC-CUacCGCGGCGGgC--GGCg -5'
6481 5' -64.2 NC_001847.1 + 132542 0.68 0.39163
Target:  5'- cUCCGGCGcGGcgGGCucgcgugcgGCCGCggCgGCCGCg -3'
miRNA:   3'- -GGGUCGU-CCuaCCG---------CGGCG--GgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132483 0.67 0.485551
Target:  5'- gCCGGCcgagccgccgGGcGAaGGCGCCGCaaGCgGCg -3'
miRNA:   3'- gGGUCG----------UC-CUaCCGCGGCGggCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 132377 0.84 0.032978
Target:  5'- gCCGGCGGGGgcgccGGCGCCgGCgCCGCCGCg -3'
miRNA:   3'- gGGUCGUCCUa----CCGCGG-CG-GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132325 0.69 0.338356
Target:  5'- gCCGGCGGaGGUgccGGCGCgGCUggcgGCCGCg -3'
miRNA:   3'- gGGUCGUC-CUA---CCGCGgCGGg---CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132177 0.77 0.115248
Target:  5'- cCCCGGCGGcGcUGcGCGCCGaggcggCCGCCGCg -3'
miRNA:   3'- -GGGUCGUC-CuAC-CGCGGCg-----GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132155 0.68 0.432881
Target:  5'- gCCGcGCAGGGUGGgGCCGgCgaacauaaaaUGCCGg -3'
miRNA:   3'- gGGU-CGUCCUACCgCGGCgG----------GCGGCg -5'
6481 5' -64.2 NC_001847.1 + 132119 0.66 0.494629
Target:  5'- gCCgAGCuGcucGGCGCgGCCCGCgaCGCg -3'
miRNA:   3'- -GGgUCGuCcuaCCGCGgCGGGCG--GCG- -5'
6481 5' -64.2 NC_001847.1 + 132038 0.72 0.242583
Target:  5'- gCCgCGGCGGGccgcGGC-CUGCCgGCCGCg -3'
miRNA:   3'- -GG-GUCGUCCua--CCGcGGCGGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 131972 0.69 0.344902
Target:  5'- gCCuGCcGcGA-GGCGCUggaggcgGCCCGCCGCg -3'
miRNA:   3'- gGGuCGuC-CUaCCGCGG-------CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 131883 0.72 0.248198
Target:  5'- gCCGcGCGGcGccGGCGCC-CCUGCCGCc -3'
miRNA:   3'- gGGU-CGUC-CuaCCGCGGcGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 131814 0.73 0.21059
Target:  5'- aCCCGG-AGGccGGCGCCGgcggcagcggcgcCCgCGCCGCg -3'
miRNA:   3'- -GGGUCgUCCuaCCGCGGC-------------GG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 131643 0.69 0.338356
Target:  5'- aCCGGgAGcguGAcGGCGCCGCugCCGCCGg -3'
miRNA:   3'- gGGUCgUC---CUaCCGCGGCG--GGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 131578 0.7 0.303646
Target:  5'- aCCuGCAGc-UGGCG-CGCCUGCUGCa -3'
miRNA:   3'- gGGuCGUCcuACCGCgGCGGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.