miRNA display CGI


Results 21 - 40 of 969 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 129206 0.79 0.077088
Target:  5'- -gCAGCGGGcgGGCccGUCGUCCGCCGCc -3'
miRNA:   3'- ggGUCGUCCuaCCG--CGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 26393 0.79 0.077088
Target:  5'- -gCAGCGGGcgGGCccGUCGUCCGCCGCc -3'
miRNA:   3'- ggGUCGUCCuaCCG--CGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 61268 0.79 0.079069
Target:  5'- uCCgCGGCGcGcGcgGGCGCCGCgCCGCCGCc -3'
miRNA:   3'- -GG-GUCGU-C-CuaCCGCGGCG-GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 75817 0.79 0.081098
Target:  5'- gCCgGGCuGGuacGGCGCCGCCggCGCCGCg -3'
miRNA:   3'- -GGgUCGuCCua-CCGCGGCGG--GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 91881 0.79 0.081098
Target:  5'- uCgCAGCAGGugccccccgGGCGCCGCgCCGcCCGCg -3'
miRNA:   3'- -GgGUCGUCCua-------CCGCGGCG-GGC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 28366 0.78 0.085307
Target:  5'- cCCCGGCGcccucgccgccGGAgacGGCGCCcccCCCGCCGCg -3'
miRNA:   3'- -GGGUCGU-----------CCUa--CCGCGGc--GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 131179 0.78 0.085307
Target:  5'- cCCCGGCGcccucgccgccGGAgacGGCGCCcccCCCGCCGCg -3'
miRNA:   3'- -GGGUCGU-----------CCUa--CCGCGGc--GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 3104 0.78 0.087489
Target:  5'- gCCGGCAGGc---CGCgGCCCGCCGCg -3'
miRNA:   3'- gGGUCGUCCuaccGCGgCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 105917 0.78 0.087489
Target:  5'- gCCGGCAGGc---CGCgGCCCGCCGCg -3'
miRNA:   3'- gGGUCGUCCuaccGCGgCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 75921 0.78 0.087489
Target:  5'- aCgAGCAcGcGGUGGCGCCGCCgugCGCCGCc -3'
miRNA:   3'- gGgUCGU-C-CUACCGCGGCGG---GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 34290 0.78 0.087489
Target:  5'- cCCCGGCGGGccGGCGCUccgGCCCuggccggaGCCGCc -3'
miRNA:   3'- -GGGUCGUCCuaCCGCGG---CGGG--------CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 16710 0.78 0.092013
Target:  5'- aCCAGCAGGAgccccacGGCGCCGagaCCGCagGCg -3'
miRNA:   3'- gGGUCGUCCUa------CCGCGGCg--GGCGg-CG- -5'
6481 5' -64.2 NC_001847.1 + 91557 0.78 0.094358
Target:  5'- cCCCAGCgccacgcuGGGgcGcGCGUCGCCCGCgGCg -3'
miRNA:   3'- -GGGUCG--------UCCuaC-CGCGGCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 48364 0.78 0.094358
Target:  5'- gCCCAGCAGcGucacgaccGUGGCGCCGCCgGgCCGg -3'
miRNA:   3'- -GGGUCGUC-C--------UACCGCGGCGGgC-GGCg -5'
6481 5' -64.2 NC_001847.1 + 31761 0.78 0.096759
Target:  5'- aCCCGGCGccGGAgacgcGGCGCuggCGUCCGCCGCc -3'
miRNA:   3'- -GGGUCGU--CCUa----CCGCG---GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 44714 0.78 0.096759
Target:  5'- gCCCaggguAGCGGGAagGGCGCCGCCuCGUgGCc -3'
miRNA:   3'- -GGG-----UCGUCCUa-CCGCGGCGG-GCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 23901 0.78 0.096759
Target:  5'- -gCGGCAGGuucgGGCGCagcaGCUCGCCGCu -3'
miRNA:   3'- ggGUCGUCCua--CCGCGg---CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 95317 0.78 0.096759
Target:  5'- gCCAcGCAGGAa-GCGCUcggGCCCGCCGCg -3'
miRNA:   3'- gGGU-CGUCCUacCGCGG---CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 134574 0.78 0.096759
Target:  5'- aCCCGGCGccGGAgacgcGGCGCuggCGUCCGCCGCc -3'
miRNA:   3'- -GGGUCGU--CCUa----CCGCG---GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 31970 0.78 0.099217
Target:  5'- -gCGGCGGGccccGUGGaCGCCGCCCucgaGCCGCg -3'
miRNA:   3'- ggGUCGUCC----UACC-GCGGCGGG----CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.