miRNA display CGI


Results 21 - 40 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 42477 0.66 0.550556
Target:  5'- gCUGGUGGGgcGGCG-CGCCgaagCGCUGCg -3'
miRNA:   3'- gGGUCGUCCuaCCGCgGCGG----GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 131500 0.66 0.550556
Target:  5'- aCgCGGCGcugguGGAccUGGUGUaCGCgCGCCGCg -3'
miRNA:   3'- -GgGUCGU-----CCU--ACCGCG-GCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 125522 0.66 0.550556
Target:  5'- gCCGGCGcggcGGcgGGCGCagcuacgguCGUCC-CCGCg -3'
miRNA:   3'- gGGUCGU----CCuaCCGCG---------GCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 105726 0.66 0.550556
Target:  5'- gCgAGCGGGGccacgguccGCGCCGCCagcgcgGCCGCn -3'
miRNA:   3'- gGgUCGUCCUac-------CGCGGCGGg-----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 10420 0.66 0.550556
Target:  5'- cCCCGcGCGGuucGcGCuGCCGCCC-CCGCg -3'
miRNA:   3'- -GGGU-CGUCcuaC-CG-CGGCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 59931 0.66 0.550556
Target:  5'- gCCGGCGGaagGGCGCCacgcaagcGUCCGgCGUg -3'
miRNA:   3'- gGGUCGUCcuaCCGCGG--------CGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 54523 0.66 0.550556
Target:  5'- -gCGGUGGGgcGGgGCCGUCCGggggCGCa -3'
miRNA:   3'- ggGUCGUCCuaCCgCGGCGGGCg---GCG- -5'
6481 5' -64.2 NC_001847.1 + 92619 0.66 0.550556
Target:  5'- aCCgAGCAgcuuuuccacGGAcGGCGCgcccggcgguuuCGCCCGCaGCg -3'
miRNA:   3'- -GGgUCGU----------CCUaCCGCG------------GCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 115500 0.66 0.550556
Target:  5'- cCCCu---GGAagGGCGCCGCgCCuauCCGCa -3'
miRNA:   3'- -GGGucguCCUa-CCGCGGCG-GGc--GGCG- -5'
6481 5' -64.2 NC_001847.1 + 18815 0.66 0.549607
Target:  5'- gCCAGCGcgcgcauGGGcacGGCGUccucgCGCgCGCCGCa -3'
miRNA:   3'- gGGUCGU-------CCUa--CCGCG-----GCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 118653 0.66 0.547708
Target:  5'- gCCGcgcGCGGGA-GGCGCaagagagguguccgCGCUcugCGCCGCg -3'
miRNA:   3'- gGGU---CGUCCUaCCGCG--------------GCGG---GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 53362 0.66 0.547708
Target:  5'- aCCAgguccgcgucauacGCGGGcagGGCuaGCUGCCggCGCCGCa -3'
miRNA:   3'- gGGU--------------CGUCCua-CCG--CGGCGG--GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 79382 0.66 0.541082
Target:  5'- -gCGGCAGc---GCGCgGCUCGCCGUg -3'
miRNA:   3'- ggGUCGUCcuacCGCGgCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 102510 0.66 0.541082
Target:  5'- --aGGCAGGGcagaGCGCgCGCCgCGCCGg -3'
miRNA:   3'- gggUCGUCCUac--CGCG-GCGG-GCGGCg -5'
6481 5' -64.2 NC_001847.1 + 17670 0.66 0.541082
Target:  5'- aCCAGagcucCAGGcgcgcaccgccaGUGGCGUUgucgGCCaCGCCGCa -3'
miRNA:   3'- gGGUC-----GUCC------------UACCGCGG----CGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 63535 0.66 0.541082
Target:  5'- gUCCGcGCugc-UGGCGCCGCCUggGCCGg -3'
miRNA:   3'- -GGGU-CGuccuACCGCGGCGGG--CGGCg -5'
6481 5' -64.2 NC_001847.1 + 27494 0.66 0.541082
Target:  5'- uUCGGCGGcaGA-GGCcucgGCCG-CCGCCGCg -3'
miRNA:   3'- gGGUCGUC--CUaCCG----CGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 31011 0.66 0.541082
Target:  5'- gUCCGGCGuuGccGGCGCgCGCgCGCCGg -3'
miRNA:   3'- -GGGUCGUc-CuaCCGCG-GCGgGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 29560 0.66 0.541082
Target:  5'- cCCCcGCAcGGAcgccGUGCCGgCUGCCGUc -3'
miRNA:   3'- -GGGuCGU-CCUac--CGCGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 77364 0.66 0.541082
Target:  5'- gCCguGCGacGcGUGGCGCCggcGCCCGCucuCGCu -3'
miRNA:   3'- -GGguCGU--CcUACCGCGG---CGGGCG---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.