miRNA display CGI


Results 41 - 60 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 120024 0.66 0.541082
Target:  5'- gCCAGCaccgccgccgucAGGGccgucagcaUGaGCGCgGCCCcgcuGCCGCa -3'
miRNA:   3'- gGGUCG------------UCCU---------AC-CGCGgCGGG----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 29560 0.66 0.541082
Target:  5'- cCCCcGCAcGGAcgccGUGCCGgCUGCCGUc -3'
miRNA:   3'- -GGGuCGU-CCUac--CGCGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 31011 0.66 0.541082
Target:  5'- gUCCGGCGuuGccGGCGCgCGCgCGCCGg -3'
miRNA:   3'- -GGGUCGUc-CuaCCGCG-GCGgGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 79382 0.66 0.541082
Target:  5'- -gCGGCAGc---GCGCgGCUCGCCGUg -3'
miRNA:   3'- ggGUCGUCcuacCGCGgCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 92270 0.66 0.541082
Target:  5'- gCCCAcUAGcGUGGCGCgGUgCGCgGCu -3'
miRNA:   3'- -GGGUcGUCcUACCGCGgCGgGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 77364 0.66 0.541082
Target:  5'- gCCguGCGacGcGUGGCGCCggcGCCCGCucuCGCu -3'
miRNA:   3'- -GGguCGU--CcUACCGCGG---CGGGCG---GCG- -5'
6481 5' -64.2 NC_001847.1 + 63535 0.66 0.541082
Target:  5'- gUCCGcGCugc-UGGCGCCGCCUggGCCGg -3'
miRNA:   3'- -GGGU-CGuccuACCGCGGCGGG--CGGCg -5'
6481 5' -64.2 NC_001847.1 + 102871 0.66 0.541082
Target:  5'- gCCAcGC-GGAcGGCGCgaGCCaCGCaCGCg -3'
miRNA:   3'- gGGU-CGuCCUaCCGCGg-CGG-GCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 21338 0.66 0.540137
Target:  5'- gCCAuuguggcGCAGacGAUGcGCGCCGUCgGCgGCu -3'
miRNA:   3'- gGGU-------CGUC--CUAC-CGCGGCGGgCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 104094 0.66 0.53825
Target:  5'- cCCaCAGCGgcgaccgcgacgucGGccGGCGuuGCCgGCgCGCg -3'
miRNA:   3'- -GG-GUCGU--------------CCuaCCGCggCGGgCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 60893 0.66 0.53825
Target:  5'- cCCCAGCAGcGgcGGCagcaggcauaccgcGUC-CCCGuuGCa -3'
miRNA:   3'- -GGGUCGUC-CuaCCG--------------CGGcGGGCggCG- -5'
6481 5' -64.2 NC_001847.1 + 74297 0.66 0.531663
Target:  5'- cCUCGGCGGGcgcggagcugcuGUuucccaugacGGUGCCG-CUGCCGCa -3'
miRNA:   3'- -GGGUCGUCC------------UA----------CCGCGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 41602 0.66 0.531663
Target:  5'- gCCAGC---GUGGCGUuguucUGCuCCGCCGUg -3'
miRNA:   3'- gGGUCGuccUACCGCG-----GCG-GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 134143 0.66 0.531663
Target:  5'- gCCuGguGGAgcgcgUGcCGCCGCCgGCgGCg -3'
miRNA:   3'- gGGuCguCCU-----ACcGCGGCGGgCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 130666 0.66 0.531663
Target:  5'- gCCGGCGccagggacgcGGggGGCGCCGaggacgcggaCGUCGCg -3'
miRNA:   3'- gGGUCGU----------CCuaCCGCGGCgg--------GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 71068 0.66 0.531663
Target:  5'- aCCCGGUgcuGGc-GGCGCuCGgCCGgCGCg -3'
miRNA:   3'- -GGGUCGu--CCuaCCGCG-GCgGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 125400 0.66 0.531663
Target:  5'- cCCCggGGCAG---GGC-CCGCCCgGUCGCg -3'
miRNA:   3'- -GGG--UCGUCcuaCCGcGGCGGG-CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 52531 0.66 0.531663
Target:  5'- gCCCGG-GGGAUggucgccggagGGCGCgGCCgacaUGCUGCg -3'
miRNA:   3'- -GGGUCgUCCUA-----------CCGCGgCGG----GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 51635 0.66 0.531663
Target:  5'- aCC-GCAGGAaGGCa-CGCagCGCCGCg -3'
miRNA:   3'- gGGuCGUCCUaCCGcgGCGg-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 44643 0.66 0.531663
Target:  5'- uCUgGGCAucGGA-GGCuGCUGcCCCGCCuGCa -3'
miRNA:   3'- -GGgUCGU--CCUaCCG-CGGC-GGGCGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.