miRNA display CGI


Results 41 - 60 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 3861 0.7 0.297041
Target:  5'- -gCAGCGGGcccuccagcGGCgGCgGCCCGUCGCg -3'
miRNA:   3'- ggGUCGUCCua-------CCG-CGgCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 3945 0.75 0.154773
Target:  5'- gCCgCGGCGGGGggGGCGCCGUCUccgGCgGCg -3'
miRNA:   3'- -GG-GUCGUCCUa-CCGCGGCGGG---CGgCG- -5'
6481 5' -64.2 NC_001847.1 + 4002 0.68 0.39163
Target:  5'- gCCCcGCGGGGcgccgggcccGGCGcCCGCCUcucgcgggGCCGCu -3'
miRNA:   3'- -GGGuCGUCCUa---------CCGC-GGCGGG--------CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 4221 0.66 0.522303
Target:  5'- gCCGGCcucGGuccUGGCcccgagggcaccGCCGCCCcCCGCc -3'
miRNA:   3'- gGGUCGu--CCu--ACCG------------CGGCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 4275 0.71 0.259751
Target:  5'- uUCGGCcuuGAggGGCGCCGCCC-CCGCc -3'
miRNA:   3'- gGGUCGuc-CUa-CCGCGGCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 4301 0.66 0.493717
Target:  5'- cCUCGGCuucGAUGGCggcggcuaugacgGCCGCUUcgGCCGCg -3'
miRNA:   3'- -GGGUCGuc-CUACCG-------------CGGCGGG--CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 4622 0.67 0.485551
Target:  5'- gCUCGGCGcGGgcGGC-CCGCCggCGCuCGCg -3'
miRNA:   3'- -GGGUCGU-CCuaCCGcGGCGG--GCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 4887 0.66 0.494629
Target:  5'- -gCGGCAGGGcccccGCGCCGCugcgaacgacaCCGaCCGCg -3'
miRNA:   3'- ggGUCGUCCUac---CGCGGCG-----------GGC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 5338 0.69 0.345635
Target:  5'- gCCGGUcGGAgcUGGCuaGCCGgCCGCgGCu -3'
miRNA:   3'- gGGUCGuCCU--ACCG--CGGCgGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 5608 0.69 0.36814
Target:  5'- aCUCGGUagacGGGcgugGGCGCCGCggucCCGCgCGCg -3'
miRNA:   3'- -GGGUCG----UCCua--CCGCGGCG----GGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 5658 0.74 0.170475
Target:  5'- gUCCAGC-GGAUGcGCGCCGUCgcgCGCgGCg -3'
miRNA:   3'- -GGGUCGuCCUAC-CGCGGCGG---GCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 5721 0.79 0.074964
Target:  5'- cCCgCAGCAGGcgGGCGUCGCaucaggggacgcaCCGCCGUc -3'
miRNA:   3'- -GG-GUCGUCCuaCCGCGGCG-------------GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 5834 0.67 0.485551
Target:  5'- gCCCGGCAGGcc--CGCCuugcaccagGCCCGCCc- -3'
miRNA:   3'- -GGGUCGUCCuaccGCGG---------CGGGCGGcg -5'
6481 5' -64.2 NC_001847.1 + 5877 0.68 0.388442
Target:  5'- gUCCAGCGcugcgcgcagGGCgGCCGCgCCGUCGCa -3'
miRNA:   3'- -GGGUCGUccua------CCG-CGGCG-GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 5936 0.71 0.271739
Target:  5'- -gCGGCGGacGAcgGGC-CCGCCCGCUGCu -3'
miRNA:   3'- ggGUCGUC--CUa-CCGcGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 6110 0.68 0.407823
Target:  5'- gCCC-GCgAGGcgcGGCGCgagCGCCuCGCCGCc -3'
miRNA:   3'- -GGGuCG-UCCua-CCGCG---GCGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 6346 0.71 0.271739
Target:  5'- cCCCGGCGGcaaccGCGCCGCgggcguagCCGCUGCg -3'
miRNA:   3'- -GGGUCGUCcuac-CGCGGCG--------GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 6489 0.7 0.329769
Target:  5'- gCCuGCAGGucguagguagcGGCGUCGCCgGCgCGCu -3'
miRNA:   3'- gGGuCGUCCua---------CCGCGGCGGgCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 6954 0.68 0.424428
Target:  5'- gCCAggcGCGGGGUcgcggcGGCGCuucCGCCCgcggGCCGCc -3'
miRNA:   3'- gGGU---CGUCCUA------CCGCG---GCGGG----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 7767 0.68 0.424428
Target:  5'- gCCCGaCGGccguUGGUGCCGaggcucgggcCCCGCCGCc -3'
miRNA:   3'- -GGGUcGUCcu--ACCGCGGC----------GGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.