miRNA display CGI


Results 41 - 60 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 105917 0.78 0.087489
Target:  5'- gCCGGCAGGc---CGCgGCCCGCCGCg -3'
miRNA:   3'- gGGUCGUCCuaccGCGgCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 75921 0.78 0.087489
Target:  5'- aCgAGCAcGcGGUGGCGCCGCCgugCGCCGCc -3'
miRNA:   3'- gGgUCGU-C-CUACCGCGGCGG---GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 16710 0.78 0.092013
Target:  5'- aCCAGCAGGAgccccacGGCGCCGagaCCGCagGCg -3'
miRNA:   3'- gGGUCGUCCUa------CCGCGGCg--GGCGg-CG- -5'
6481 5' -64.2 NC_001847.1 + 48364 0.78 0.094358
Target:  5'- gCCCAGCAGcGucacgaccGUGGCGCCGCCgGgCCGg -3'
miRNA:   3'- -GGGUCGUC-C--------UACCGCGGCGGgC-GGCg -5'
6481 5' -64.2 NC_001847.1 + 95317 0.78 0.096759
Target:  5'- gCCAcGCAGGAa-GCGCUcggGCCCGCCGCg -3'
miRNA:   3'- gGGU-CGUCCUacCGCGG---CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 23901 0.78 0.096759
Target:  5'- -gCGGCAGGuucgGGCGCagcaGCUCGCCGCu -3'
miRNA:   3'- ggGUCGUCCua--CCGCGg---CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 134574 0.78 0.096759
Target:  5'- aCCCGGCGccGGAgacgcGGCGCuggCGUCCGCCGCc -3'
miRNA:   3'- -GGGUCGU--CCUa----CCGCG---GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 31970 0.78 0.099217
Target:  5'- -gCGGCGGGccccGUGGaCGCCGCCCucgaGCCGCg -3'
miRNA:   3'- ggGUCGUCC----UACC-GCGGCGGG----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 2467 0.78 0.099217
Target:  5'- aUCgAGCGGGcggcGGCGCC-CCCGCCGCc -3'
miRNA:   3'- -GGgUCGUCCua--CCGCGGcGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 55459 0.77 0.101734
Target:  5'- gCCGGCGGGgcGcGCGCCGCgCUaGCCGCu -3'
miRNA:   3'- gGGUCGUCCuaC-CGCGGCG-GG-CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 55510 0.77 0.104312
Target:  5'- gCCCuGCugc-UGGCGgCGCCCGCCGCg -3'
miRNA:   3'- -GGGuCGuccuACCGCgGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 106758 0.77 0.106951
Target:  5'- gCCgCGGCGGGGggGGCGCCGUcuCCGgCGCg -3'
miRNA:   3'- -GG-GUCGUCCUa-CCGCGGCG--GGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 93467 0.77 0.108564
Target:  5'- cCCCAGCAGGAUcuccuugaagaGCCGCgUGCCGCg -3'
miRNA:   3'- -GGGUCGUCCUAccg--------CGGCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 45260 0.77 0.109652
Target:  5'- gCCGGCGuGAgcgcGGCGaaGCCCGCCGCg -3'
miRNA:   3'- gGGUCGUcCUa---CCGCggCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 112625 0.77 0.112418
Target:  5'- uCCCGGCAGaccGGC-CCgGCCCGCCGCc -3'
miRNA:   3'- -GGGUCGUCcuaCCGcGG-CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 13118 0.77 0.112418
Target:  5'- gCCGgggcgcGCGGGcgGcgccGCGCCGCCUGCCGCg -3'
miRNA:   3'- gGGU------CGUCCuaC----CGCGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 105255 0.77 0.115248
Target:  5'- gCCGGCAGGGc--CGCCGCCuCGCCGUc -3'
miRNA:   3'- gGGUCGUCCUaccGCGGCGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132177 0.77 0.115248
Target:  5'- cCCCGGCGGcGcUGcGCGCCGaggcggCCGCCGCg -3'
miRNA:   3'- -GGGUCGUC-CuAC-CGCGGCg-----GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 33875 0.76 0.12111
Target:  5'- uUCUuGCAGGA-GGCGCCGCCgcgcgugGCCGCg -3'
miRNA:   3'- -GGGuCGUCCUaCCGCGGCGGg------CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 77015 0.76 0.124143
Target:  5'- aCCAGgAGGuccUGGCGCucaucCGCCgCGCCGCa -3'
miRNA:   3'- gGGUCgUCCu--ACCGCG-----GCGG-GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.