miRNA display CGI


Results 41 - 60 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 9899 0.66 0.550556
Target:  5'- gCCCGaccGCGuGGucucgGGCcCCGCCC-CCGCg -3'
miRNA:   3'- -GGGU---CGU-CCua---CCGcGGCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 53179 0.66 0.522303
Target:  5'- gCCC-GCGuGAUGaGCG-CGCCCGCgGUg -3'
miRNA:   3'- -GGGuCGUcCUAC-CGCgGCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 120459 0.66 0.507464
Target:  5'- gCCuGCuccaucgccGCGCCGCCgGCCGCg -3'
miRNA:   3'- gGGuCGuccuac---CGCGGCGGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 84539 0.66 0.513008
Target:  5'- gCCCGGC--GAaGGCGCC-CgCGUCGCa -3'
miRNA:   3'- -GGGUCGucCUaCCGCGGcGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 72989 0.66 0.523236
Target:  5'- gCCCGcGCGGGAgcuggccgcagcgcgGGCGCgGaaCCagGCCGCg -3'
miRNA:   3'- -GGGU-CGUCCUa--------------CCGCGgC--GGg-CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 120024 0.66 0.541082
Target:  5'- gCCAGCaccgccgccgucAGGGccgucagcaUGaGCGCgGCCCcgcuGCCGCa -3'
miRNA:   3'- gGGUCG------------UCCU---------AC-CGCGgCGGG----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 28687 0.66 0.550556
Target:  5'- aCgCGGCGcugguGGAccUGGUGUaCGCgCGCCGCg -3'
miRNA:   3'- -GgGUCGU-----CCU--ACCGCG-GCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 34169 0.66 0.550556
Target:  5'- uUCCGucGCucGGAgcucGGCGCCGagcCCCGCUGUu -3'
miRNA:   3'- -GGGU--CGu-CCUa---CCGCGGC---GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 77118 0.66 0.541082
Target:  5'- gCCAGCAGc--GG-GCCGCCCuuGuuGCu -3'
miRNA:   3'- gGGUCGUCcuaCCgCGGCGGG--CggCG- -5'
6481 5' -64.2 NC_001847.1 + 68722 0.66 0.531663
Target:  5'- uCCCuGgAGGGUGuaCGUCaGCCCgcGCCGCg -3'
miRNA:   3'- -GGGuCgUCCUACc-GCGG-CGGG--CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 16454 0.66 0.531663
Target:  5'- aCCCAGCcGG--GGCuGCgGCCCGgcccaacccCCGCc -3'
miRNA:   3'- -GGGUCGuCCuaCCG-CGgCGGGC---------GGCG- -5'
6481 5' -64.2 NC_001847.1 + 92270 0.66 0.541082
Target:  5'- gCCCAcUAGcGUGGCGCgGUgCGCgGCu -3'
miRNA:   3'- -GGGUcGUCcUACCGCGgCGgGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 65456 0.66 0.550556
Target:  5'- gCCCGuGUAGGcgGGCGCgCGCggagGCuCGCu -3'
miRNA:   3'- -GGGU-CGUCCuaCCGCG-GCGgg--CG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 103711 0.66 0.522303
Target:  5'- aCCAGCGcca--GCGaCGUCCGCCGCg -3'
miRNA:   3'- gGGUCGUccuacCGCgGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 1161 0.66 0.522303
Target:  5'- cUCCGGCAGc---GCgGCCGCgcagaaggccaCCGCCGCg -3'
miRNA:   3'- -GGGUCGUCcuacCG-CGGCG-----------GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 115970 0.66 0.530724
Target:  5'- cCCCGccgugcugcGCGGGGUaacaacgGGCGCgG-CCGCUGCc -3'
miRNA:   3'- -GGGU---------CGUCCUA-------CCGCGgCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 123994 0.66 0.513008
Target:  5'- gCCGGUAGuuUaGcCGCCGCagcuCCGCCGCg -3'
miRNA:   3'- gGGUCGUCcuAcC-GCGGCG----GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 32560 1.11 0.000337
Target:  5'- gCCCAGCAGGAUGGCGCCGCCCGCCGCu -3'
miRNA:   3'- -GGGUCGUCCUACCGCGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 70931 0.66 0.507464
Target:  5'- cUCUAGCgcgaacugacgcgccAGGGUcgccaGCGUcgCGCCCGCCGCc -3'
miRNA:   3'- -GGGUCG---------------UCCUAc----CGCG--GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 14020 0.66 0.521371
Target:  5'- -gCAGCAGGc-GGCGgCGCagcgcgcaguuuaCCGUCGCg -3'
miRNA:   3'- ggGUCGUCCuaCCGCgGCG-------------GGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.