miRNA display CGI


Results 21 - 40 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 104094 0.66 0.53825
Target:  5'- cCCaCAGCGgcgaccgcgacgucGGccGGCGuuGCCgGCgCGCg -3'
miRNA:   3'- -GG-GUCGU--------------CCuaCCGCggCGGgCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 92270 0.66 0.541082
Target:  5'- gCCCAcUAGcGUGGCGCgGUgCGCgGCu -3'
miRNA:   3'- -GGGUcGUCcUACCGCGgCGgGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 13244 0.66 0.550556
Target:  5'- gCCAGCGGGGccacgcgGGCGguUCGCaggcagGCCGCg -3'
miRNA:   3'- gGGUCGUCCUa------CCGC--GGCGgg----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 100877 0.66 0.550556
Target:  5'- gCCCAGCcgccgcgcgccGGucuGCGCCucgcGCCgCGCCGCg -3'
miRNA:   3'- -GGGUCGu----------CCuacCGCGG----CGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 95515 0.66 0.531663
Target:  5'- gCCUGGCGGGc--GCGCCaggcuuGCCCcuggggcugggGCCGCg -3'
miRNA:   3'- -GGGUCGUCCuacCGCGG------CGGG-----------CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 27853 0.66 0.531663
Target:  5'- gCCGGCGccagggacgcGGggGGCGCCGaggacgcggaCGUCGCg -3'
miRNA:   3'- gGGUCGU----------CCuaCCGCGGCgg--------GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 104700 0.66 0.541082
Target:  5'- gCCCAccucguGCAGccccGGCGCCuccgcGCCCGCCa- -3'
miRNA:   3'- -GGGU------CGUCcua-CCGCGG-----CGGGCGGcg -5'
6481 5' -64.2 NC_001847.1 + 111337 0.66 0.550556
Target:  5'- gCgAGCAGuGGUcGGUgGCCGCCgCGCUGg -3'
miRNA:   3'- gGgUCGUC-CUA-CCG-CGGCGG-GCGGCg -5'
6481 5' -64.2 NC_001847.1 + 31330 0.66 0.531663
Target:  5'- gCCuGguGGAgcgcgUGcCGCCGCCgGCgGCg -3'
miRNA:   3'- gGGuCguCCU-----ACcGCGGCGGgCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 125522 0.66 0.550556
Target:  5'- gCCGGCGcggcGGcgGGCGCagcuacgguCGUCC-CCGCg -3'
miRNA:   3'- gGGUCGU----CCuaCCGCG---------GCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 102871 0.66 0.541082
Target:  5'- gCCAcGC-GGAcGGCGCgaGCCaCGCaCGCg -3'
miRNA:   3'- gGGU-CGuCCUaCCGCGg-CGG-GCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 60893 0.66 0.53825
Target:  5'- cCCCAGCAGcGgcGGCagcaggcauaccgcGUC-CCCGuuGCa -3'
miRNA:   3'- -GGGUCGUC-CuaCCG--------------CGGcGGGCggCG- -5'
6481 5' -64.2 NC_001847.1 + 74425 0.66 0.541082
Target:  5'- gCCCGucguGgAGGucGUGGCGgCGCacgaCGCCGUg -3'
miRNA:   3'- -GGGU----CgUCC--UACCGCgGCGg---GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 42477 0.66 0.550556
Target:  5'- gCUGGUGGGgcGGCG-CGCCgaagCGCUGCg -3'
miRNA:   3'- gGGUCGUCCuaCCGCgGCGG----GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 118406 0.66 0.550556
Target:  5'- gUCAGCGucGUGGcCGUCGCCUGCgGUc -3'
miRNA:   3'- gGGUCGUccUACC-GCGGCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 34169 0.66 0.550556
Target:  5'- uUCCGucGCucGGAgcucGGCGCCGagcCCCGCUGUu -3'
miRNA:   3'- -GGGU--CGu-CCUa---CCGCGGC---GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 66692 0.66 0.522303
Target:  5'- cCCCGGCc-GcgGGCGCgGaCCUcugcgGCCGCu -3'
miRNA:   3'- -GGGUCGucCuaCCGCGgC-GGG-----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 115970 0.66 0.530724
Target:  5'- cCCCGccgugcugcGCGGGGUaacaacgGGCGCgG-CCGCUGCc -3'
miRNA:   3'- -GGGU---------CGUCCUA-------CCGCGgCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 22587 0.66 0.531663
Target:  5'- cCCCggGGCAG---GGC-CCGCCCgGUCGCg -3'
miRNA:   3'- -GGG--UCGUCcuaCCGcGGCGGG-CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 16454 0.66 0.531663
Target:  5'- aCCCAGCcGG--GGCuGCgGCCCGgcccaacccCCGCc -3'
miRNA:   3'- -GGGUCGuCCuaCCG-CGgCGGGC---------GGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.