Results 21 - 40 of 969 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 94076 | 0.66 | 0.550556 |
Target: 5'- aCCCuGCGGGAcu-UGCUGCCCG-UGCa -3' miRNA: 3'- -GGGuCGUCCUaccGCGGCGGGCgGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 68722 | 0.66 | 0.531663 |
Target: 5'- uCCCuGgAGGGUGuaCGUCaGCCCgcGCCGCg -3' miRNA: 3'- -GGGuCgUCCUACc-GCGG-CGGG--CGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 105906 | 0.66 | 0.531663 |
Target: 5'- gCC-GCGGGGccaugcagUGGCGgaucgucugcuCCaGCCCGCCGUc -3' miRNA: 3'- gGGuCGUCCU--------ACCGC-----------GG-CGGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 99553 | 0.66 | 0.541082 |
Target: 5'- gCgCAGCAGGuucuugaGGUugGCCaGCCCGgCGCc -3' miRNA: 3'- -GgGUCGUCCua-----CCG--CGG-CGGGCgGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 118653 | 0.66 | 0.547708 |
Target: 5'- gCCGcgcGCGGGA-GGCGCaagagagguguccgCGCUcugCGCCGCg -3' miRNA: 3'- gGGU---CGUCCUaCCGCG--------------GCGG---GCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 100517 | 0.66 | 0.530724 |
Target: 5'- cCUCGGCGcgcaGGCGCCggacuuccucggcGCgCCGCCGCg -3' miRNA: 3'- -GGGUCGUccuaCCGCGG-------------CG-GGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 14940 | 0.66 | 0.531663 |
Target: 5'- --aGGCuGcGAgcgGGCGCCGCUCG-CGCg -3' miRNA: 3'- gggUCGuC-CUa--CCGCGGCGGGCgGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 103199 | 0.66 | 0.550556 |
Target: 5'- gCCgCGGCAGGcucgucCGCUuaCCCGCCGCg -3' miRNA: 3'- -GG-GUCGUCCuacc--GCGGc-GGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 51635 | 0.66 | 0.531663 |
Target: 5'- aCC-GCAGGAaGGCa-CGCagCGCCGCg -3' miRNA: 3'- gGGuCGUCCUaCCGcgGCGg-GCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 104094 | 0.66 | 0.53825 |
Target: 5'- cCCaCAGCGgcgaccgcgacgucGGccGGCGuuGCCgGCgCGCg -3' miRNA: 3'- -GG-GUCGU--------------CCuaCCGCggCGGgCG-GCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 9899 | 0.66 | 0.550556 |
Target: 5'- gCCCGaccGCGuGGucucgGGCcCCGCCC-CCGCg -3' miRNA: 3'- -GGGU---CGU-CCua---CCGcGGCGGGcGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 28687 | 0.66 | 0.550556 |
Target: 5'- aCgCGGCGcugguGGAccUGGUGUaCGCgCGCCGCg -3' miRNA: 3'- -GgGUCGU-----CCU--ACCGCG-GCGgGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 53179 | 0.66 | 0.522303 |
Target: 5'- gCCC-GCGuGAUGaGCG-CGCCCGCgGUg -3' miRNA: 3'- -GGGuCGUcCUAC-CGCgGCGGGCGgCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 72989 | 0.66 | 0.523236 |
Target: 5'- gCCCGcGCGGGAgcuggccgcagcgcgGGCGCgGaaCCagGCCGCg -3' miRNA: 3'- -GGGU-CGUCCUa--------------CCGCGgC--GGg-CGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 16454 | 0.66 | 0.531663 |
Target: 5'- aCCCAGCcGG--GGCuGCgGCCCGgcccaacccCCGCc -3' miRNA: 3'- -GGGUCGuCCuaCCG-CGgCGGGC---------GGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 120024 | 0.66 | 0.541082 |
Target: 5'- gCCAGCaccgccgccgucAGGGccgucagcaUGaGCGCgGCCCcgcuGCCGCa -3' miRNA: 3'- gGGUCG------------UCCU---------AC-CGCGgCGGG----CGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 53362 | 0.66 | 0.547708 |
Target: 5'- aCCAgguccgcgucauacGCGGGcagGGCuaGCUGCCggCGCCGCa -3' miRNA: 3'- gGGU--------------CGUCCua-CCG--CGGCGG--GCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 34169 | 0.66 | 0.550556 |
Target: 5'- uUCCGucGCucGGAgcucGGCGCCGagcCCCGCUGUu -3' miRNA: 3'- -GGGU--CGu-CCUa---CCGCGGC---GGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 77118 | 0.66 | 0.541082 |
Target: 5'- gCCAGCAGc--GG-GCCGCCCuuGuuGCu -3' miRNA: 3'- gGGUCGUCcuaCCgCGGCGGG--CggCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 46190 | 0.66 | 0.531663 |
Target: 5'- cCCgGGCGcGGAgaggucGGCG-UGUCCGUCGCg -3' miRNA: 3'- -GGgUCGU-CCUa-----CCGCgGCGGGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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