miRNA display CGI


Results 21 - 40 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 94076 0.66 0.550556
Target:  5'- aCCCuGCGGGAcu-UGCUGCCCG-UGCa -3'
miRNA:   3'- -GGGuCGUCCUaccGCGGCGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 68722 0.66 0.531663
Target:  5'- uCCCuGgAGGGUGuaCGUCaGCCCgcGCCGCg -3'
miRNA:   3'- -GGGuCgUCCUACc-GCGG-CGGG--CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 105906 0.66 0.531663
Target:  5'- gCC-GCGGGGccaugcagUGGCGgaucgucugcuCCaGCCCGCCGUc -3'
miRNA:   3'- gGGuCGUCCU--------ACCGC-----------GG-CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 99553 0.66 0.541082
Target:  5'- gCgCAGCAGGuucuugaGGUugGCCaGCCCGgCGCc -3'
miRNA:   3'- -GgGUCGUCCua-----CCG--CGG-CGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 118653 0.66 0.547708
Target:  5'- gCCGcgcGCGGGA-GGCGCaagagagguguccgCGCUcugCGCCGCg -3'
miRNA:   3'- gGGU---CGUCCUaCCGCG--------------GCGG---GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 100517 0.66 0.530724
Target:  5'- cCUCGGCGcgcaGGCGCCggacuuccucggcGCgCCGCCGCg -3'
miRNA:   3'- -GGGUCGUccuaCCGCGG-------------CG-GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 14940 0.66 0.531663
Target:  5'- --aGGCuGcGAgcgGGCGCCGCUCG-CGCg -3'
miRNA:   3'- gggUCGuC-CUa--CCGCGGCGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 103199 0.66 0.550556
Target:  5'- gCCgCGGCAGGcucgucCGCUuaCCCGCCGCg -3'
miRNA:   3'- -GG-GUCGUCCuacc--GCGGc-GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 51635 0.66 0.531663
Target:  5'- aCC-GCAGGAaGGCa-CGCagCGCCGCg -3'
miRNA:   3'- gGGuCGUCCUaCCGcgGCGg-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 104094 0.66 0.53825
Target:  5'- cCCaCAGCGgcgaccgcgacgucGGccGGCGuuGCCgGCgCGCg -3'
miRNA:   3'- -GG-GUCGU--------------CCuaCCGCggCGGgCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 9899 0.66 0.550556
Target:  5'- gCCCGaccGCGuGGucucgGGCcCCGCCC-CCGCg -3'
miRNA:   3'- -GGGU---CGU-CCua---CCGcGGCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 28687 0.66 0.550556
Target:  5'- aCgCGGCGcugguGGAccUGGUGUaCGCgCGCCGCg -3'
miRNA:   3'- -GgGUCGU-----CCU--ACCGCG-GCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 53179 0.66 0.522303
Target:  5'- gCCC-GCGuGAUGaGCG-CGCCCGCgGUg -3'
miRNA:   3'- -GGGuCGUcCUAC-CGCgGCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 72989 0.66 0.523236
Target:  5'- gCCCGcGCGGGAgcuggccgcagcgcgGGCGCgGaaCCagGCCGCg -3'
miRNA:   3'- -GGGU-CGUCCUa--------------CCGCGgC--GGg-CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 16454 0.66 0.531663
Target:  5'- aCCCAGCcGG--GGCuGCgGCCCGgcccaacccCCGCc -3'
miRNA:   3'- -GGGUCGuCCuaCCG-CGgCGGGC---------GGCG- -5'
6481 5' -64.2 NC_001847.1 + 120024 0.66 0.541082
Target:  5'- gCCAGCaccgccgccgucAGGGccgucagcaUGaGCGCgGCCCcgcuGCCGCa -3'
miRNA:   3'- gGGUCG------------UCCU---------AC-CGCGgCGGG----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 53362 0.66 0.547708
Target:  5'- aCCAgguccgcgucauacGCGGGcagGGCuaGCUGCCggCGCCGCa -3'
miRNA:   3'- gGGU--------------CGUCCua-CCG--CGGCGG--GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 34169 0.66 0.550556
Target:  5'- uUCCGucGCucGGAgcucGGCGCCGagcCCCGCUGUu -3'
miRNA:   3'- -GGGU--CGu-CCUa---CCGCGGC---GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 77118 0.66 0.541082
Target:  5'- gCCAGCAGc--GG-GCCGCCCuuGuuGCu -3'
miRNA:   3'- gGGUCGUCcuaCCgCGGCGGG--CggCG- -5'
6481 5' -64.2 NC_001847.1 + 46190 0.66 0.531663
Target:  5'- cCCgGGCGcGGAgaggucGGCG-UGUCCGUCGCg -3'
miRNA:   3'- -GGgUCGU-CCUa-----CCGCgGCGGGCGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.