miRNA display CGI


Results 1 - 20 of 969 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 94076 0.66 0.550556
Target:  5'- aCCCuGCGGGAcu-UGCUGCCCG-UGCa -3'
miRNA:   3'- -GGGuCGUCCUaccGCGGCGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 104700 0.66 0.541082
Target:  5'- gCCCAccucguGCAGccccGGCGCCuccgcGCCCGCCa- -3'
miRNA:   3'- -GGGU------CGUCcua-CCGCGG-----CGGGCGGcg -5'
6481 5' -64.2 NC_001847.1 + 92270 0.66 0.541082
Target:  5'- gCCCAcUAGcGUGGCGCgGUgCGCgGCu -3'
miRNA:   3'- -GGGUcGUCcUACCGCGgCGgGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 32560 1.11 0.000337
Target:  5'- gCCCAGCAGGAUGGCGCCGCCCGCCGCu -3'
miRNA:   3'- -GGGUCGUCCUACCGCGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 34169 0.66 0.550556
Target:  5'- uUCCGucGCucGGAgcucGGCGCCGagcCCCGCUGUu -3'
miRNA:   3'- -GGGU--CGu-CCUa---CCGCGGC---GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 28687 0.66 0.550556
Target:  5'- aCgCGGCGcugguGGAccUGGUGUaCGCgCGCCGCg -3'
miRNA:   3'- -GgGUCGU-----CCU--ACCGCG-GCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 118406 0.66 0.550556
Target:  5'- gUCAGCGucGUGGcCGUCGCCUGCgGUc -3'
miRNA:   3'- gGGUCGUccUACC-GCGGCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 103199 0.66 0.550556
Target:  5'- gCCgCGGCAGGcucgucCGCUuaCCCGCCGCg -3'
miRNA:   3'- -GG-GUCGUCCuacc--GCGGc-GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 42477 0.66 0.550556
Target:  5'- gCUGGUGGGgcGGCG-CGCCgaagCGCUGCg -3'
miRNA:   3'- gGGUCGUCCuaCCGCgGCGG----GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 116446 0.66 0.541082
Target:  5'- -gCGGUGGGcgcUGGCGCaCGCgCGgCGCg -3'
miRNA:   3'- ggGUCGUCCu--ACCGCG-GCGgGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 53362 0.66 0.547708
Target:  5'- aCCAgguccgcgucauacGCGGGcagGGCuaGCUGCCggCGCCGCa -3'
miRNA:   3'- gGGU--------------CGUCCua-CCG--CGGCGG--GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 13244 0.66 0.550556
Target:  5'- gCCAGCGGGGccacgcgGGCGguUCGCaggcagGCCGCg -3'
miRNA:   3'- gGGUCGUCCUa------CCGC--GGCGgg----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 125522 0.66 0.550556
Target:  5'- gCCGGCGcggcGGcgGGCGCagcuacgguCGUCC-CCGCg -3'
miRNA:   3'- gGGUCGU----CCuaCCGCG---------GCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 74425 0.66 0.541082
Target:  5'- gCCCGucguGgAGGucGUGGCGgCGCacgaCGCCGUg -3'
miRNA:   3'- -GGGU----CgUCC--UACCGCgGCGg---GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 111337 0.66 0.550556
Target:  5'- gCgAGCAGuGGUcGGUgGCCGCCgCGCUGg -3'
miRNA:   3'- gGgUCGUC-CUA-CCG-CGGCGG-GCGGCg -5'
6481 5' -64.2 NC_001847.1 + 65456 0.66 0.550556
Target:  5'- gCCCGuGUAGGcgGGCGCgCGCggagGCuCGCu -3'
miRNA:   3'- -GGGU-CGUCCuaCCGCG-GCGgg--CG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 120024 0.66 0.541082
Target:  5'- gCCAGCaccgccgccgucAGGGccgucagcaUGaGCGCgGCCCcgcuGCCGCa -3'
miRNA:   3'- gGGUCG------------UCCU---------AC-CGCGgCGGG----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 102871 0.66 0.541082
Target:  5'- gCCAcGC-GGAcGGCGCgaGCCaCGCaCGCg -3'
miRNA:   3'- gGGU-CGuCCUaCCGCGg-CGG-GCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 100877 0.66 0.550556
Target:  5'- gCCCAGCcgccgcgcgccGGucuGCGCCucgcGCCgCGCCGCg -3'
miRNA:   3'- -GGGUCGu----------CCuacCGCGG----CGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 9899 0.66 0.550556
Target:  5'- gCCCGaccGCGuGGucucgGGCcCCGCCC-CCGCg -3'
miRNA:   3'- -GGGU---CGU-CCua---CCGcGGCGGGcGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.