miRNA display CGI


Results 1 - 20 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 55510 0.77 0.104312
Target:  5'- gCCCuGCugc-UGGCGgCGCCCGCCGCg -3'
miRNA:   3'- -GGGuCGuccuACCGCgGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 16710 0.78 0.092013
Target:  5'- aCCAGCAGGAgccccacGGCGCCGagaCCGCagGCg -3'
miRNA:   3'- gGGUCGUCCUa------CCGCGGCg--GGCGg-CG- -5'
6481 5' -64.2 NC_001847.1 + 48364 0.78 0.094358
Target:  5'- gCCCAGCAGcGucacgaccGUGGCGCCGCCgGgCCGg -3'
miRNA:   3'- -GGGUCGUC-C--------UACCGCGGCGGgC-GGCg -5'
6481 5' -64.2 NC_001847.1 + 95317 0.78 0.096759
Target:  5'- gCCAcGCAGGAa-GCGCUcggGCCCGCCGCg -3'
miRNA:   3'- gGGU-CGUCCUacCGCGG---CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 23901 0.78 0.096759
Target:  5'- -gCGGCAGGuucgGGCGCagcaGCUCGCCGCu -3'
miRNA:   3'- ggGUCGUCCua--CCGCGg---CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 134574 0.78 0.096759
Target:  5'- aCCCGGCGccGGAgacgcGGCGCuggCGUCCGCCGCc -3'
miRNA:   3'- -GGGUCGU--CCUa----CCGCG---GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 31970 0.78 0.099217
Target:  5'- -gCGGCGGGccccGUGGaCGCCGCCCucgaGCCGCg -3'
miRNA:   3'- ggGUCGUCC----UACC-GCGGCGGG----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 2467 0.78 0.099217
Target:  5'- aUCgAGCGGGcggcGGCGCC-CCCGCCGCc -3'
miRNA:   3'- -GGgUCGUCCua--CCGCGGcGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 55459 0.77 0.101734
Target:  5'- gCCGGCGGGgcGcGCGCCGCgCUaGCCGCu -3'
miRNA:   3'- gGGUCGUCCuaC-CGCGGCG-GG-CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 75921 0.78 0.087489
Target:  5'- aCgAGCAcGcGGUGGCGCCGCCgugCGCCGCc -3'
miRNA:   3'- gGgUCGU-C-CUACCGCGGCGG---GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 105917 0.78 0.087489
Target:  5'- gCCGGCAGGc---CGCgGCCCGCCGCg -3'
miRNA:   3'- gGGUCGUCCuaccGCGgCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 131179 0.78 0.085307
Target:  5'- cCCCGGCGcccucgccgccGGAgacGGCGCCcccCCCGCCGCg -3'
miRNA:   3'- -GGGUCGU-----------CCUa--CCGCGGc--GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132377 0.84 0.032978
Target:  5'- gCCGGCGGGGgcgccGGCGCCgGCgCCGCCGCg -3'
miRNA:   3'- gGGUCGUCCUa----CCGCGG-CG-GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 29432 0.84 0.034737
Target:  5'- gCCAGCgagcgcugGGGcGUGGCGCCGCCCGCgGCc -3'
miRNA:   3'- gGGUCG--------UCC-UACCGCGGCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 124537 0.83 0.042739
Target:  5'- gCCAGCAGGGcgcgggccGGCGCCgGCCCGCgCGCg -3'
miRNA:   3'- gGGUCGUCCUa-------CCGCGG-CGGGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 24321 0.82 0.045006
Target:  5'- gCCCAGCgAGcGGUGGCG-CGCCaCGCCGCg -3'
miRNA:   3'- -GGGUCG-UC-CUACCGCgGCGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 53621 0.8 0.071427
Target:  5'- -gCGGCGGGGUGGCaCCGCCCgaGCUGCa -3'
miRNA:   3'- ggGUCGUCCUACCGcGGCGGG--CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 5721 0.79 0.074964
Target:  5'- cCCgCAGCAGGcgGGCGUCGCaucaggggacgcaCCGCCGUc -3'
miRNA:   3'- -GG-GUCGUCCuaCCGCGGCG-------------GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 129206 0.79 0.077088
Target:  5'- -gCAGCGGGcgGGCccGUCGUCCGCCGCc -3'
miRNA:   3'- ggGUCGUCCuaCCG--CGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 61268 0.79 0.079069
Target:  5'- uCCgCGGCGcGcGcgGGCGCCGCgCCGCCGCc -3'
miRNA:   3'- -GG-GUCGU-C-CuaCCGCGGCG-GGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.