miRNA display CGI


Results 1 - 20 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 32560 1.11 0.000337
Target:  5'- gCCCAGCAGGAUGGCGCCGCCCGCCGCu -3'
miRNA:   3'- -GGGUCGUCCUACCGCGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 90825 0.87 0.020623
Target:  5'- gCCCGGCGGGcaccgcucUGGCGCUgGCCCGCCGCg -3'
miRNA:   3'- -GGGUCGUCCu-------ACCGCGG-CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 119084 0.85 0.028211
Target:  5'- gCCCAGCAGa--GGCGCCGCggCCGCCGCg -3'
miRNA:   3'- -GGGUCGUCcuaCCGCGGCG--GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132377 0.84 0.032978
Target:  5'- gCCGGCGGGGgcgccGGCGCCgGCgCCGCCGCg -3'
miRNA:   3'- gGGUCGUCCUa----CCGCGG-CG-GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 29564 0.84 0.032978
Target:  5'- gCCGGCGGGGgcgccGGCGCCgGCgCCGCCGCg -3'
miRNA:   3'- gGGUCGUCCUa----CCGCGG-CG-GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 29432 0.84 0.034737
Target:  5'- gCCAGCgagcgcugGGGcGUGGCGCCGCCCGCgGCc -3'
miRNA:   3'- gGGUCG--------UCC-UACCGCGGCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 93316 0.84 0.036588
Target:  5'- cCCCAGCccuGGGAcccGCGCCGCCCGcCCGCg -3'
miRNA:   3'- -GGGUCG---UCCUac-CGCGGCGGGC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 122011 0.84 0.036588
Target:  5'- gCCgCGGCAGGcggcgcGGCGCCGCCCGCgCGCc -3'
miRNA:   3'- -GG-GUCGUCCua----CCGCGGCGGGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 21724 0.83 0.042739
Target:  5'- gCCAGCAGGGcgcgggccGGCGCCgGCCCGCgCGCg -3'
miRNA:   3'- gGGUCGUCCUa-------CCGCGG-CGGGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 124537 0.83 0.042739
Target:  5'- gCCAGCAGGGcgcgggccGGCGCCgGCCCGCgCGCg -3'
miRNA:   3'- gGGUCGUCCUa-------CCGCGG-CGGGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 46258 0.83 0.043858
Target:  5'- cCCCGGCGGGAgc-CGCCGCcgCCGCCGCg -3'
miRNA:   3'- -GGGUCGUCCUaccGCGGCG--GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 24321 0.82 0.045006
Target:  5'- gCCCAGCgAGcGGUGGCG-CGCCaCGCCGCg -3'
miRNA:   3'- -GGGUCG-UC-CUACCGCgGCGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 74830 0.82 0.049898
Target:  5'- gCgAGCAGG-UGGCgcgcgcgcGCCGCCCGCCGCc -3'
miRNA:   3'- gGgUCGUCCuACCG--------CGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 82824 0.8 0.06128
Target:  5'- aCCAGCGuguuucccGGuUGGCGCCGCCCGCgccCGCg -3'
miRNA:   3'- gGGUCGU--------CCuACCGCGGCGGGCG---GCG- -5'
6481 5' -64.2 NC_001847.1 + 81278 0.8 0.064497
Target:  5'- cCCCcGCGGcGGUcGGCGCCGCCagCGCCGCc -3'
miRNA:   3'- -GGGuCGUC-CUA-CCGCGGCGG--GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 101435 0.8 0.06963
Target:  5'- cCCCAGCucGGccacGCGCCGCCgCGCCGCg -3'
miRNA:   3'- -GGGUCGu-CCuac-CGCGGCGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 88942 0.8 0.071427
Target:  5'- gCCCGGCGGc--GGcCGCCGCCgGCCGCu -3'
miRNA:   3'- -GGGUCGUCcuaCC-GCGGCGGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 53621 0.8 0.071427
Target:  5'- -gCGGCGGGGUGGCaCCGCCCgaGCUGCa -3'
miRNA:   3'- ggGUCGUCCUACCGcGGCGGG--CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 5721 0.79 0.074964
Target:  5'- cCCgCAGCAGGcgGGCGUCGCaucaggggacgcaCCGCCGUc -3'
miRNA:   3'- -GG-GUCGUCCuaCCGCGGCG-------------GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 65676 0.79 0.075155
Target:  5'- gCCAGCAGGAgcccCGCCG-CCGCCGCg -3'
miRNA:   3'- gGGUCGUCCUacc-GCGGCgGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.