miRNA display CGI


Results 1 - 20 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 60148 0.66 0.494629
Target:  5'- gCCGaagaacGCGGGGU-GCGCCacGCCCGCgaGCg -3'
miRNA:   3'- gGGU------CGUCCUAcCGCGG--CGGGCGg-CG- -5'
6481 5' -64.2 NC_001847.1 + 14804 0.66 0.503782
Target:  5'- aCCgCAGCGgcGGAgcUGcGCGgCGCCCuGCgCGCg -3'
miRNA:   3'- -GG-GUCGU--CCU--AC-CGCgGCGGG-CG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 33789 0.66 0.494629
Target:  5'- gCUUcGCGGGGcUGcGCGCggCGCCCGgCGCg -3'
miRNA:   3'- -GGGuCGUCCU-AC-CGCG--GCGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 39859 0.66 0.494629
Target:  5'- gCCAGCGGccgcaagcuuGccGGCGCC-CCCGaUCGCg -3'
miRNA:   3'- gGGUCGUC----------CuaCCGCGGcGGGC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 118669 0.66 0.503782
Target:  5'- aCCCAgGCAGGGcgGGgGUUggGCCgGgCCGCa -3'
miRNA:   3'- -GGGU-CGUCCUa-CCgCGG--CGGgC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 107700 0.66 0.494629
Target:  5'- -gCGGCAGGGcccccGCGCCGCugcgaacgacaCCGaCCGCg -3'
miRNA:   3'- ggGUCGUCCUac---CGCGGCG-----------GGC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 134098 0.66 0.494629
Target:  5'- gCCC-GCGGGAgacgcucGUGCUGCUgcggcgCGCCGCg -3'
miRNA:   3'- -GGGuCGUCCUac-----CGCGGCGG------GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 81234 0.66 0.494629
Target:  5'- -gCAGCGgcGGcgGGCcagGCUggGCCUGCCGCu -3'
miRNA:   3'- ggGUCGU--CCuaCCG---CGG--CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 29499 0.66 0.494629
Target:  5'- cUCCGGCcgcGGgcGGCGCUucggccgcagaGCUCGcCCGCg -3'
miRNA:   3'- -GGGUCGu--CCuaCCGCGG-----------CGGGC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 51965 0.66 0.501028
Target:  5'- cCCgCGGCAGuGAUgcacugggugcgccGGCGCaucgcggacgCGCCCgacGCCGCg -3'
miRNA:   3'- -GG-GUCGUC-CUA--------------CCGCG----------GCGGG---CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 31156 0.66 0.503782
Target:  5'- gCCUucGCGGGc-GGCGUCGa-CGCCGCg -3'
miRNA:   3'- -GGGu-CGUCCuaCCGCGGCggGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 56054 0.66 0.503782
Target:  5'- cCCCu--GGGA-GGCGCCGCUgaaGCCuGCg -3'
miRNA:   3'- -GGGucgUCCUaCCGCGGCGGg--CGG-CG- -5'
6481 5' -64.2 NC_001847.1 + 43125 0.66 0.494629
Target:  5'- gCCCGcagacggcGCGGGcccgcgGGCGCugCGCCCGCaguCGCu -3'
miRNA:   3'- -GGGU--------CGUCCua----CCGCG--GCGGGCG---GCG- -5'
6481 5' -64.2 NC_001847.1 + 72617 0.66 0.503782
Target:  5'- gCC-GCAcGGcacGUGCCGCCCguGCCGCa -3'
miRNA:   3'- gGGuCGU-CCuacCGCGGCGGG--CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132119 0.66 0.494629
Target:  5'- gCCgAGCuGcucGGCGCgGCCCGCgaCGCg -3'
miRNA:   3'- -GGgUCGuCcuaCCGCGgCGGGCG--GCG- -5'
6481 5' -64.2 NC_001847.1 + 73278 0.66 0.494629
Target:  5'- cCCCcGCGGGcgcucggcaGGCGCgGCCuaCGCCGg -3'
miRNA:   3'- -GGGuCGUCCua-------CCGCGgCGG--GCGGCg -5'
6481 5' -64.2 NC_001847.1 + 88598 0.66 0.494629
Target:  5'- gCgCGGCuGGAggaccucgcGcGCGCCG-CCGCCGCc -3'
miRNA:   3'- -GgGUCGuCCUa--------C-CGCGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 119522 0.66 0.494629
Target:  5'- gCCA-CGGG--GGCGUCGuUCCGCCGUa -3'
miRNA:   3'- gGGUcGUCCuaCCGCGGC-GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 106307 0.66 0.494629
Target:  5'- aCCGGCGGcagcGGCGCCGUCaCGCUc- -3'
miRNA:   3'- gGGUCGUCcua-CCGCGGCGG-GCGGcg -5'
6481 5' -64.2 NC_001847.1 + 107114 0.66 0.493717
Target:  5'- cCUCGGCuucGAUGGCggcggcuaugacgGCCGCUUcgGCCGCg -3'
miRNA:   3'- -GGGUCGuc-CUACCG-------------CGGCGGG--CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.