miRNA display CGI

Results 1 - 20 of 969 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6481	5'	-64.2	NC_001847.1	+	276	0.71	0.271129
	Target:  5'- gCCCGGgGGccgccgagcccgcGcgGGCGCCGUCC-CCGCg -3' miRNA:   3'- -GGGUCgUC-------------CuaCCGCGGCGGGcGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	421	0.7	0.331189
	Target:  5'- gCCCggGGCGGGcgGGCGgCGgCgGCgGCg -3' miRNA:   3'- -GGG--UCGUCCuaCCGCgGCgGgCGgCG- -5'
6481	5'	-64.2	NC_001847.1	+	540	0.7	0.297041
	Target:  5'- gCCCGacGCGGGGaacgUGGCGgcggaCGCCagCGCCGCg -3' miRNA:   3'- -GGGU--CGUCCU----ACCGCg----GCGG--GCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	743	0.72	0.242583
	Target:  5'- uCCC-GCGGGccccccuagGGCgagGCCgGCCCGCCGCc -3' miRNA:   3'- -GGGuCGUCCua-------CCG---CGG-CGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	888	0.71	0.266291
	Target:  5'- gCCCGcGCcGGGgccgccgcggccgccGGcCGCCGCCCGCCGg -3' miRNA:   3'- -GGGU-CGuCCUa--------------CC-GCGGCGGGCGGCg -5'
6481	5'	-64.2	NC_001847.1	+	1014	0.69	0.345635
	Target:  5'- cUCCAcCAGGc---CGCCGCCCGCgGCg -3' miRNA:   3'- -GGGUcGUCCuaccGCGGCGGGCGgCG- -5'
6481	5'	-64.2	NC_001847.1	+	1081	0.72	0.245377
	Target:  5'- uCCCAGUccacgccgGGCGCCGCggccgcgggcggcgCCGCCGCg -3' miRNA:   3'- -GGGUCGuccua---CCGCGGCG--------------GGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	1135	0.67	0.458814
	Target:  5'- aCCAGCGGc--GGCGCCucgGCgCGCgGCu -3' miRNA:   3'- gGGUCGUCcuaCCGCGG---CGgGCGgCG- -5'
6481	5'	-64.2	NC_001847.1	+	1161	0.66	0.522303
	Target:  5'- cUCCGGCAGc---GCgGCCGCgcagaaggccaCCGCCGCg -3' miRNA:   3'- -GGGUCGUCcuacCG-CGGCG-----------GGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	1198	0.69	0.345635
	Target:  5'- gCCGGCAGcucgucgGGCGCCagcuccagcGCgCGCCGCc -3' miRNA:   3'- gGGUCGUCcua----CCGCGG---------CGgGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	1276	0.73	0.187585
	Target:  5'- cCCCAGCGGuuggcggcgcGGUGGCugGCCGCCuCGCCc- -3' miRNA:   3'- -GGGUCGUC----------CUACCG--CGGCGG-GCGGcg -5'
6481	5'	-64.2	NC_001847.1	+	1573	0.71	0.259751
	Target:  5'- gCCAGCAcGGcgcGCGCCaGCgCGCCGCu -3' miRNA:   3'- gGGUCGU-CCuacCGCGG-CGgGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	1710	0.68	0.432881
	Target:  5'- gUCgAGCAcGAUcagcCGCCGCCgCGCCGCg -3' miRNA:   3'- -GGgUCGUcCUAcc--GCGGCGG-GCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	1896	0.7	0.331189
	Target:  5'- gCCCAGCGccGcGAgcgcGUGCgagaGCCCGCCGCg -3' miRNA:   3'- -GGGUCGU--C-CUac--CGCGg---CGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	1952	0.69	0.345635
	Target:  5'- gCCGGCGcucguccucgccGGgcGGCGCCGCCagCGCCu- -3' miRNA:   3'- gGGUCGU------------CCuaCCGCGGCGG--GCGGcg -5'
6481	5'	-64.2	NC_001847.1	+	2028	0.69	0.360528
	Target:  5'- uUCCAGCAc---GGCGCCGgCCGUgGCc -3' miRNA:   3'- -GGGUCGUccuaCCGCGGCgGGCGgCG- -5'
6481	5'	-64.2	NC_001847.1	+	2205	0.67	0.467641
	Target:  5'- aCCu-CGGGgcGGCaguagGCCGCCagCGCCGCg -3' miRNA:   3'- gGGucGUCCuaCCG-----CGGCGG--GCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	2308	0.7	0.331189
	Target:  5'- -aCGGCuGcccAUGGCGacaCGCCCGCUGCg -3' miRNA:   3'- ggGUCGuCc--UACCGCg--GCGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	2321	0.74	0.170475
	Target:  5'- cCCCAGCacgcGGGcgGGCaGCgGCggcucCCGCCGCg -3' miRNA:   3'- -GGGUCG----UCCuaCCG-CGgCG-----GGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	2442	0.77	0.115248
	Target:  5'- gCCGGCAGGGc--CGCCGCCuCGCCGUc -3' miRNA:   3'- gGGUCGUCCUaccGCGGCGG-GCGGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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