miRNA display CGI


Results 1 - 20 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 135126 0.67 0.467641
Target:  5'- cCCCGgggucGCAGGG-GGC-CCGCgCGgCGCg -3'
miRNA:   3'- -GGGU-----CGUCCUaCCGcGGCGgGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 135068 0.71 0.284168
Target:  5'- gCCCagAGCGGGcccgGGC-CCGCCgCGCCGa -3'
miRNA:   3'- -GGG--UCGUCCua--CCGcGGCGG-GCGGCg -5'
6481 5' -64.2 NC_001847.1 + 134841 0.71 0.253921
Target:  5'- cUCCGGCGGGGcgcggGGaCGgCGCCCG-CGCg -3'
miRNA:   3'- -GGGUCGUCCUa----CC-GCgGCGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 134637 0.73 0.192093
Target:  5'- uCCgCGGaCAGGggGGUuggcgcgcgGCCGcCCCGCCGCc -3'
miRNA:   3'- -GG-GUC-GUCCuaCCG---------CGGC-GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 134574 0.78 0.096759
Target:  5'- aCCCGGCGccGGAgacgcGGCGCuggCGUCCGCCGCc -3'
miRNA:   3'- -GGGUCGU--CCUa----CCGCG---GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 134512 0.73 0.211084
Target:  5'- gCCUcgggGGCGGGGggaGGCgcggGCCGCgCGCCGCu -3'
miRNA:   3'- -GGG----UCGUCCUa--CCG----CGGCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 134351 0.69 0.383692
Target:  5'- cCCCGccucGUcggacgacgacgAGGccGGCGCCGCCgGCgGCg -3'
miRNA:   3'- -GGGU----CG------------UCCuaCCGCGGCGGgCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 134261 0.68 0.399674
Target:  5'- -nCGGCGGccccGGCGCgGgCCGCCGCc -3'
miRNA:   3'- ggGUCGUCcua-CCGCGgCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 134237 0.74 0.166421
Target:  5'- gCCGGCGGGc-GGCgGCCGgCgGCCGCg -3'
miRNA:   3'- gGGUCGUCCuaCCG-CGGCgGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 134167 0.72 0.23167
Target:  5'- gCguGCGGGccGGCGCauagaCGCCCGgCGCa -3'
miRNA:   3'- gGguCGUCCuaCCGCG-----GCGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 134143 0.66 0.531663
Target:  5'- gCCuGguGGAgcgcgUGcCGCCGCCgGCgGCg -3'
miRNA:   3'- gGGuCguCCU-----ACcGCGGCGGgCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 134098 0.66 0.494629
Target:  5'- gCCC-GCGGGAgacgcucGUGCUGCUgcggcgCGCCGCg -3'
miRNA:   3'- -GGGuCGUCCUac-----CGCGGCGG------GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 134040 0.74 0.170475
Target:  5'- gCC-GCGGc--GGCGCCGCCCGCgGCc -3'
miRNA:   3'- gGGuCGUCcuaCCGCGGCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 133931 0.68 0.407823
Target:  5'- -gCGGCGcgcgcuGGAgcUGGCGCCcgacgagcuGCCgGCCGCg -3'
miRNA:   3'- ggGUCGU------CCU--ACCGCGG---------CGGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 133726 0.7 0.310363
Target:  5'- gCCUGGCGGGcgcGGgGCCGCgUGCCuGCc -3'
miRNA:   3'- -GGGUCGUCCua-CCgCGGCGgGCGG-CG- -5'
6481 5' -64.2 NC_001847.1 + 133490 0.68 0.407823
Target:  5'- gCCCGGCcgucGGGcaGGCGCacguguaccUGCgCGCCGCg -3'
miRNA:   3'- -GGGUCG----UCCuaCCGCG---------GCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 133196 0.68 0.424428
Target:  5'- gCCCucgcuGgAGGAgcucuGCGCCGCgCGCCGg -3'
miRNA:   3'- -GGGu----CgUCCUac---CGCGGCGgGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 133194 0.75 0.154773
Target:  5'- gCCCGGCgAGGAcgagcgccGGCggcccgagugGCCGCCgCGCCGCg -3'
miRNA:   3'- -GGGUCG-UCCUa-------CCG----------CGGCGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 133067 0.7 0.317193
Target:  5'- gCCCcGCGGGgcGcuCGCCGCCacCGCUGCg -3'
miRNA:   3'- -GGGuCGUCCuaCc-GCGGCGG--GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 133007 0.68 0.39163
Target:  5'- gCCCGGCGcucgccuucgaccccGA-GGCGCUggccgagaucgcgGCCCGCCGCc -3'
miRNA:   3'- -GGGUCGUc--------------CUaCCGCGG-------------CGGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.