miRNA display CGI


Results 61 - 80 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 31330 0.66 0.531663
Target:  5'- gCCuGguGGAgcgcgUGcCGCCGCCgGCgGCg -3'
miRNA:   3'- gGGuCguCCU-----ACcGCGGCGGgCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 27853 0.66 0.531663
Target:  5'- gCCGGCGccagggacgcGGggGGCGCCGaggacgcggaCGUCGCg -3'
miRNA:   3'- gGGUCGU----------CCuaCCGCGGCgg--------GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 105906 0.66 0.531663
Target:  5'- gCC-GCGGGGccaugcagUGGCGgaucgucugcuCCaGCCCGCCGUc -3'
miRNA:   3'- gGGuCGUCCU--------ACCGC-----------GG-CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 44643 0.66 0.531663
Target:  5'- uCUgGGCAucGGA-GGCuGCUGcCCCGCCuGCa -3'
miRNA:   3'- -GGgUCGU--CCUaCCG-CGGC-GGGCGG-CG- -5'
6481 5' -64.2 NC_001847.1 + 130666 0.66 0.531663
Target:  5'- gCCGGCGccagggacgcGGggGGCGCCGaggacgcggaCGUCGCg -3'
miRNA:   3'- gGGUCGU----------CCuaCCGCGGCgg--------GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 71068 0.66 0.531663
Target:  5'- aCCCGGUgcuGGc-GGCGCuCGgCCGgCGCg -3'
miRNA:   3'- -GGGUCGu--CCuaCCGCG-GCgGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 41602 0.66 0.531663
Target:  5'- gCCAGC---GUGGCGUuguucUGCuCCGCCGUg -3'
miRNA:   3'- gGGUCGuccUACCGCG-----GCG-GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 125400 0.66 0.531663
Target:  5'- cCCCggGGCAG---GGC-CCGCCCgGUCGCg -3'
miRNA:   3'- -GGG--UCGUCcuaCCGcGGCGGG-CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 52531 0.66 0.531663
Target:  5'- gCCCGG-GGGAUggucgccggagGGCGCgGCCgacaUGCUGCg -3'
miRNA:   3'- -GGGUCgUCCUA-----------CCGCGgCGG----GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 74297 0.66 0.531663
Target:  5'- cCUCGGCGGGcgcggagcugcuGUuucccaugacGGUGCCG-CUGCCGCa -3'
miRNA:   3'- -GGGUCGUCC------------UA----------CCGCGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 50444 0.66 0.530724
Target:  5'- aCCCGcGCugcgacaAGGAcGGCaaGCCG-CUGCCGCa -3'
miRNA:   3'- -GGGU-CG-------UCCUaCCG--CGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 60510 0.66 0.530724
Target:  5'- gCCGGCGGGccuuuuuAUGGcCGCgGCaCCGCucacacCGCg -3'
miRNA:   3'- gGGUCGUCC-------UACC-GCGgCG-GGCG------GCG- -5'
6481 5' -64.2 NC_001847.1 + 100517 0.66 0.530724
Target:  5'- cCUCGGCGcgcaGGCGCCggacuuccucggcGCgCCGCCGCg -3'
miRNA:   3'- -GGGUCGUccuaCCGCGG-------------CG-GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 115970 0.66 0.530724
Target:  5'- cCCCGccgugcugcGCGGGGUaacaacgGGCGCgG-CCGCUGCc -3'
miRNA:   3'- -GGGU---------CGUCCUA-------CCGCGgCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 37552 0.66 0.526039
Target:  5'- aCgGGCGGcccuucggaagacgcGgcGGCGCUGgCCGCUGCg -3'
miRNA:   3'- gGgUCGUC---------------CuaCCGCGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 48738 0.66 0.526039
Target:  5'- --aGGCGGcGGUGcaguaugacucagccGCG-CGCCCGCCGCc -3'
miRNA:   3'- gggUCGUC-CUAC---------------CGCgGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 24211 0.66 0.526039
Target:  5'- -aCGGcCAGGAgcaGGCGCUcgGCgaucuccacguucagCCGCCGCg -3'
miRNA:   3'- ggGUC-GUCCUa--CCGCGG--CG---------------GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 72989 0.66 0.523236
Target:  5'- gCCCGcGCGGGAgcuggccgcagcgcgGGCGCgGaaCCagGCCGCg -3'
miRNA:   3'- -GGGU-CGUCCUa--------------CCGCGgC--GGg-CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 66504 0.66 0.522303
Target:  5'- gCCAGCGGcgcGGUGgaggcGCGCCGCCUuGCgGUc -3'
miRNA:   3'- gGGUCGUC---CUAC-----CGCGGCGGG-CGgCG- -5'
6481 5' -64.2 NC_001847.1 + 71893 0.66 0.522303
Target:  5'- ---cGCGGuGAUGGCGCUGCa-GCgGCg -3'
miRNA:   3'- ggguCGUC-CUACCGCGGCGggCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.