miRNA display CGI

Results 21 - 40 of 969 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6481	5'	-64.2	NC_001847.1	+	65676	0.79	0.075155
	Target:  5'- gCCAGCAGGAgcccCGCCG-CCGCCGCg -3' miRNA:   3'- gGGUCGUCCUacc-GCGGCgGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	91881	0.79	0.081098
	Target:  5'- uCgCAGCAGGugccccccgGGCGCCGCgCCGcCCGCg -3' miRNA:   3'- -GgGUCGUCCua-------CCGCGGCG-GGC-GGCG- -5'
6481	5'	-64.2	NC_001847.1	+	61268	0.79	0.079069
	Target:  5'- uCCgCGGCGcGcGcgGGCGCCGCgCCGCCGCc -3' miRNA:   3'- -GG-GUCGU-C-CuaCCGCGGCG-GGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	129206	0.79	0.077088
	Target:  5'- -gCAGCGGGcgGGCccGUCGUCCGCCGCc -3' miRNA:   3'- ggGUCGUCCuaCCG--CGGCGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	5721	0.79	0.074964
	Target:  5'- cCCgCAGCAGGcgGGCGUCGCaucaggggacgcaCCGCCGUc -3' miRNA:   3'- -GG-GUCGUCCuaCCGCGGCG-------------GGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	34290	0.78	0.087489
	Target:  5'- cCCCGGCGGGccGGCGCUccgGCCCuggccggaGCCGCc -3' miRNA:   3'- -GGGUCGUCCuaCCGCGG---CGGG--------CGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	3104	0.78	0.087489
	Target:  5'- gCCGGCAGGc---CGCgGCCCGCCGCg -3' miRNA:   3'- gGGUCGUCCuaccGCGgCGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	131179	0.78	0.085307
	Target:  5'- cCCCGGCGcccucgccgccGGAgacGGCGCCcccCCCGCCGCg -3' miRNA:   3'- -GGGUCGU-----------CCUa--CCGCGGc--GGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	105917	0.78	0.087489
	Target:  5'- gCCGGCAGGc---CGCgGCCCGCCGCg -3' miRNA:   3'- gGGUCGUCCuaccGCGgCGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	91557	0.78	0.094358
	Target:  5'- cCCCAGCgccacgcuGGGgcGcGCGUCGCCCGCgGCg -3' miRNA:   3'- -GGGUCG--------UCCuaC-CGCGGCGGGCGgCG- -5'
6481	5'	-64.2	NC_001847.1	+	31761	0.78	0.096759
	Target:  5'- aCCCGGCGccGGAgacgcGGCGCuggCGUCCGCCGCc -3' miRNA:   3'- -GGGUCGU--CCUa----CCGCG---GCGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	75921	0.78	0.087489
	Target:  5'- aCgAGCAcGcGGUGGCGCCGCCgugCGCCGCc -3' miRNA:   3'- gGgUCGU-C-CUACCGCGGCGG---GCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	2467	0.78	0.099217
	Target:  5'- aUCgAGCGGGcggcGGCGCC-CCCGCCGCc -3' miRNA:   3'- -GGgUCGUCCua--CCGCGGcGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	31970	0.78	0.099217
	Target:  5'- -gCGGCGGGccccGUGGaCGCCGCCCucgaGCCGCg -3' miRNA:   3'- ggGUCGUCC----UACC-GCGGCGGG----CGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	134574	0.78	0.096759
	Target:  5'- aCCCGGCGccGGAgacgcGGCGCuggCGUCCGCCGCc -3' miRNA:   3'- -GGGUCGU--CCUa----CCGCG---GCGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	23901	0.78	0.096759
	Target:  5'- -gCGGCAGGuucgGGCGCagcaGCUCGCCGCu -3' miRNA:   3'- ggGUCGUCCua--CCGCGg---CGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	95317	0.78	0.096759
	Target:  5'- gCCAcGCAGGAa-GCGCUcggGCCCGCCGCg -3' miRNA:   3'- gGGU-CGUCCUacCGCGG---CGGGCGGCG- -5'
6481	5'	-64.2	NC_001847.1	+	48364	0.78	0.094358
	Target:  5'- gCCCAGCAGcGucacgaccGUGGCGCCGCCgGgCCGg -3' miRNA:   3'- -GGGUCGUC-C--------UACCGCGGCGGgC-GGCg -5'
6481	5'	-64.2	NC_001847.1	+	16710	0.78	0.092013
	Target:  5'- aCCAGCAGGAgccccacGGCGCCGagaCCGCagGCg -3' miRNA:   3'- gGGUCGUCCUa------CCGCGGCg--GGCGg-CG- -5'
6481	5'	-64.2	NC_001847.1	+	28366	0.78	0.085307
	Target:  5'- cCCCGGCGcccucgccgccGGAgacGGCGCCcccCCCGCCGCg -3' miRNA:   3'- -GGGUCGU-----------CCUa--CCGCGGc--GGGCGGCG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home